Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SE071780_RS02515 Genome accession   NZ_CP021972
Coordinates   484743..485468 (+) Length   241 a.a.
NCBI ID   WP_012678429.1    Uniprot ID   -
Organism   Streptococcus equi subsp. equi strain ATCC 39506     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 479743..490468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE071780_RS02485 (SE071780_00516) tsaE 480202..480645 (+) 444 WP_012679091.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SE071780_RS02490 (SE071780_00517) - 480638..481165 (+) 528 WP_012679092.1 GNAT family N-acetyltransferase -
  SE071780_RS02495 (SE071780_00518) - 481166..482428 (+) 1263 WP_012679093.1 LCP family protein -
  SE071780_RS02500 (SE071780_00519) - 482598..482894 (-) 297 WP_012679094.1 hypothetical protein -
  SE071780_RS02505 (SE071780_00520) - 482891..483310 (-) 420 WP_012679095.1 HIT family protein -
  SE071780_RS02510 (SE071780_00521) - 483763..484206 (-) 444 WP_012679096.1 hypothetical protein -
  SE071780_RS02515 (SE071780_00522) pptA 484743..485468 (+) 726 WP_012678429.1 ABC transporter ATP-binding protein Regulator
  SE071780_RS02520 (SE071780_00523) - 485472..486506 (+) 1035 WP_012679097.1 ABC transporter permease -
  SE071780_RS02525 (SE071780_00524) ccrZ 486569..487360 (+) 792 WP_012515084.1 cell cycle regulator CcrZ -
  SE071780_RS02530 (SE071780_00525) trmB 487360..487995 (+) 636 WP_012679098.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SE071780_RS02540 (SE071780_00529) rimP 489385..489867 (+) 483 WP_042356782.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26506.80 Da        Isoelectric Point: 4.8615

>NTDB_id=235418 SE071780_RS02515 WP_012678429.1 484743..485468(+) (pptA) [Streptococcus equi subsp. equi strain ATCC 39506]
MLNIENVTGGYLNIPVLKDISFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGRISIDGLTLAEHEADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAHKRAEPFLELFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAIADLIKALEVEKAKGKSILMSTHVLDSAEKMCDRFVILHQGQVRAQGTLADLQAVFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=235418 SE071780_RS02515 WP_012678429.1 484743..485468(+) (pptA) [Streptococcus equi subsp. equi strain ATCC 39506]
ATGTTAAACATTGAGAATGTCACTGGAGGCTACCTTAATATTCCAGTTTTGAAGGATATTAGCTTTTCTGTCGGAAATGG
AGAGCTAGTAGGGCTTATTGGTCTAAATGGTGCTGGTAAGTCAACAACGATTAATGAAATTATTGGGTTTTTAAAGCCAT
ATAAGGGAAGGATTTCCATTGATGGCTTAACCTTGGCGGAGCATGAAGCTGATTATCGCAAGAAAATTGGCTTTATCCCA
GAAACACCAAGCCTGTATGAGGAGCTGACCTTAGCAGAGCATATCAATACGGTAGCTATGGCCTATGATATTGATGTGGA
GCTGGCACATAAGCGAGCTGAGCCCTTCTTAGAGCTGTTTCGTTTGACGGATAAGCTGGATTGGTTTCCGGTGCATTTTT
CTAAGGGAATGAAGCAAAAGGTTATGATTATTTGCGCTTTTGTCATTGACCCTAGTCTTTTTATTCTTGATGAGCCCTTT
TTGGGGCTTGACCCCTTAGCAATTGCTGATTTGATTAAGGCTTTAGAGGTTGAAAAGGCAAAGGGCAAGTCAATTCTAAT
GAGTACCCATGTGCTGGATTCGGCAGAAAAAATGTGTGACCGTTTTGTGATATTGCATCAGGGACAGGTGCGTGCACAAG
GGACTCTGGCGGATTTGCAGGCAGTCTTTGGAGATGCTTCAGCTAGTCTTAATGACATTTACCTAGCGCTGACAAAAGAG
GGGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.477

99.17

0.739
  pptA Streptococcus thermophilus LMD-9

73.64

99.17

0.73

Multiple sequence alignment