Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   SE071780_RS01100 Genome accession   NZ_CP021972
Coordinates   180652..183093 (+) Length   813 a.a.
NCBI ID   WP_012678892.1    Uniprot ID   C0M7D2
Organism   Streptococcus equi subsp. equi strain ATCC 39506     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 142762..192106 180652..183093 within 0


Gene organization within MGE regions


Location: 142762..192106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE071780_RS00810 (SE071780_00164) - 142762..143829 (-) 1068 WP_050322791.1 tyrosine-type recombinase/integrase -
  SE071780_RS00815 (SE071780_00165) - 143956..144231 (-) 276 WP_050317028.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SE071780_RS00820 (SE071780_00166) - 144221..144439 (-) 219 WP_050315896.1 DUF6290 family protein -
  SE071780_RS00825 (SE071780_00167) - 144455..145183 (-) 729 WP_231191385.1 helix-turn-helix transcriptional regulator -
  SE071780_RS00830 (SE071780_00168) - 145365..145571 (+) 207 WP_050315895.1 helix-turn-helix transcriptional regulator -
  SE071780_RS00835 (SE071780_00169) - 145621..145776 (+) 156 WP_154388505.1 hypothetical protein -
  SE071780_RS00840 (SE071780_00170) - 145777..145980 (-) 204 WP_050315894.1 hypothetical protein -
  SE071780_RS00845 - 146040..146501 (+) 462 WP_050332221.1 hypothetical protein -
  SE071780_RS00850 (SE071780_00172) - 146643..147359 (+) 717 WP_050332223.1 phage antirepressor KilAC domain-containing protein -
  SE071780_RS00855 (SE071780_00173) - 147393..147542 (+) 150 WP_002988326.1 hypothetical protein -
  SE071780_RS00860 (SE071780_00174) - 147539..147739 (-) 201 WP_002988329.1 KTSC domain-containing protein -
  SE071780_RS00865 (SE071780_00175) - 147850..148134 (+) 285 WP_012678833.1 hypothetical protein -
  SE071780_RS00870 (SE071780_00176) - 148131..148277 (+) 147 WP_166525023.1 hypothetical protein -
  SE071780_RS00875 (SE071780_00178) - 148481..148726 (+) 246 WP_012678836.1 helix-turn-helix domain-containing protein -
  SE071780_RS00880 (SE071780_00179) - 148888..149271 (+) 384 WP_012678837.1 DnaD domain protein -
  SE071780_RS00885 (SE071780_00180) - 149252..149485 (+) 234 WP_012678838.1 hypothetical protein -
  SE071780_RS00890 (SE071780_00181) - 149482..149622 (+) 141 WP_154243848.1 hypothetical protein -
  SE071780_RS00895 (SE071780_00182) - 149631..149837 (+) 207 WP_050322796.1 hypothetical protein -
  SE071780_RS00900 (SE071780_00183) - 149972..150877 (+) 906 WP_050322797.1 RecT family recombinase -
  SE071780_RS00905 (SE071780_00184) - 150877..152088 (+) 1212 WP_050322799.1 DUF1351 domain-containing protein -
  SE071780_RS00910 (SE071780_00185) - 152081..152917 (+) 837 WP_050322800.1 PD-(D/E)XK nuclease-like domain-containing protein -
  SE071780_RS00915 (SE071780_00186) - 153102..153443 (+) 342 WP_050322564.1 hypothetical protein -
  SE071780_RS00920 (SE071780_00187) - 153440..153952 (+) 513 WP_050322801.1 hypothetical protein -
  SE071780_RS00925 (SE071780_00189) - 154174..154401 (+) 228 WP_050322802.1 hypothetical protein -
  SE071780_RS00930 (SE071780_00190) - 154405..154827 (+) 423 WP_050322804.1 DUF1642 domain-containing protein -
  SE071780_RS00935 (SE071780_00193) - 155602..156036 (+) 435 WP_050315875.1 ArpU family phage packaging/lysis transcriptional regulator -
  SE071780_RS00945 (SE071780_00195) - 156822..157298 (+) 477 WP_268864720.1 terminase small subunit -
  SE071780_RS00950 (SE071780_00196) - 157288..158586 (+) 1299 WP_050322806.1 PBSX family phage terminase large subunit -
  SE071780_RS00955 (SE071780_00197) - 158641..160095 (+) 1455 WP_154388471.1 phage portal protein -
  SE071780_RS00960 (SE071780_00198) - 160095..161705 (+) 1611 WP_050315872.1 phage minor capsid protein -
  SE071780_RS00965 (SE071780_00199) - 161671..161892 (+) 222 WP_050315871.1 CPCC family cysteine-rich protein -
  SE071780_RS00970 (SE071780_00200) - 161944..162228 (+) 285 WP_050315870.1 hypothetical protein -
  SE071780_RS00975 (SE071780_00201) - 162314..162553 (+) 240 WP_050315869.1 hypothetical protein -
  SE071780_RS00980 (SE071780_00202) - 162538..163140 (+) 603 WP_050315868.1 hypothetical protein -
  SE071780_RS00985 (SE071780_00203) - 163142..164014 (+) 873 WP_050315867.1 hypothetical protein -
  SE071780_RS00990 (SE071780_00204) - 164025..164273 (+) 249 WP_050315866.1 hypothetical protein -
  SE071780_RS00995 (SE071780_00205) - 164276..164662 (+) 387 WP_050315865.1 hypothetical protein -
  SE071780_RS01000 (SE071780_00206) - 164656..165000 (+) 345 WP_050315864.1 putative minor capsid protein -
  SE071780_RS01005 (SE071780_00207) - 164997..165350 (+) 354 WP_050315863.1 minor capsid protein -
  SE071780_RS01010 (SE071780_00208) - 165353..165721 (+) 369 WP_050315862.1 hypothetical protein -
  SE071780_RS01015 (SE071780_00209) - 165725..166222 (+) 498 WP_050316375.1 hypothetical protein -
  SE071780_RS01020 (SE071780_00210) - 166242..166649 (+) 408 WP_050315860.1 hypothetical protein -
  SE071780_RS01025 (SE071780_00211) - 166657..167274 (+) 618 WP_050315859.1 Gp15 family bacteriophage protein -
  SE071780_RS01030 (SE071780_00212) - 167275..169722 (+) 2448 WP_050315858.1 phage tail tape measure protein -
  SE071780_RS01035 (SE071780_00213) - 169726..170487 (+) 762 WP_050315857.1 phage tail domain-containing protein -
  SE071780_RS01040 (SE071780_00214) - 170498..172495 (+) 1998 WP_080358141.1 phage tail protein -
  SE071780_RS01045 (SE071780_00215) - 172495..173598 (+) 1104 WP_160211124.1 hyaluronoglucosaminidase -
  SE071780_RS01050 (SE071780_00216) - 173608..175512 (+) 1905 WP_161452372.1 gp58-like family protein -
  SE071780_RS01055 (SE071780_00217) - 175521..175952 (+) 432 WP_050332235.1 DUF1617 family protein -
  SE071780_RS01060 (SE071780_00218) - 175956..176567 (+) 612 WP_050322814.1 DUF1366 domain-containing protein -
  SE071780_RS01065 (SE071780_00219) - 176578..176868 (+) 291 WP_050322815.1 hypothetical protein -
  SE071780_RS01070 (SE071780_00220) - 176871..177050 (+) 180 WP_064056104.1 hypothetical protein -
  SE071780_RS01075 (SE071780_00221) - 177162..178358 (+) 1197 WP_050322816.1 glucosaminidase domain-containing protein -
  SE071780_RS01080 (SE071780_00222) - 178643..179158 (+) 516 WP_023077389.1 hypothetical protein -
  SE071780_RS01085 (SE071780_00223) prx 179354..179566 (+) 213 WP_050322817.1 hypothetical protein Regulator
  SE071780_RS01090 (SE071780_00224) - 179818..180021 (+) 204 WP_012514799.1 cold-shock protein -
  SE071780_RS01095 (SE071780_00225) - 180191..180652 (+) 462 WP_012678891.1 CtsR family transcriptional regulator -
  SE071780_RS01100 (SE071780_00226) clpC 180652..183093 (+) 2442 WP_012678892.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SE071780_RS01105 - 183441..183586 (-) 146 Protein_181 putative holin-like toxin -
  SE071780_RS01110 (SE071780_00229) - 183866..184300 (+) 435 WP_012678893.1 hypothetical protein -
  SE071780_RS01115 (SE071780_00230) - 184302..184433 (+) 132 WP_268257812.1 hypothetical protein -
  SE071780_RS01120 (SE071780_00231) - 184521..184952 (+) 432 WP_012678894.1 hypothetical protein -
  SE071780_RS01125 (SE071780_00232) - 184954..186243 (+) 1290 WP_042356701.1 hypothetical protein -
  SE071780_RS01130 (SE071780_00233) - 186225..186617 (+) 393 WP_012678896.1 hypothetical protein -
  SE071780_RS01135 (SE071780_00234) - 186598..186888 (+) 291 WP_012514805.1 hypothetical protein -
  SE071780_RS01145 (SE071780_00237) groL 188580..190205 (-) 1626 WP_012678897.1 chaperonin GroEL -
  SE071780_RS01150 (SE071780_00238) groES 190273..190560 (-) 288 WP_012514806.1 co-chaperone GroES -
  SE071780_RS01155 - 190755..192106 (+) 1352 WP_214494475.1 IS3 family transposase -

Sequence


Protein


Download         Length: 813 a.a.        Molecular weight: 90367.29 Da        Isoelectric Point: 6.3494

>NTDB_id=235412 SE071780_RS01100 WP_012678892.1 180652..183093(+) (clpC) [Streptococcus equi subsp. equi strain ATCC 39506]
MMIYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVINEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVEDAYQILLGLKPSYEQYHNVTISDT
AVHTAVKLARRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMSKVSALLVKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGCKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSEAGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide


Download         Length: 2442 bp        

>NTDB_id=235412 SE071780_RS01100 WP_012678892.1 180652..183093(+) (clpC) [Streptococcus equi subsp. equi strain ATCC 39506]
GTGATGATTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAAGCAGAGCGCTTTGATAGTCCTTACCT
TGAGACCTGGCATATTTTATTAGCTATGGTAGCTGTTGACCATTCCTTAGCGGCCATGGTGTTAAGCGAATTTGAACGAA
AGATTAGGGCTGAAGAGTATGAGGCTGCTGCTATTTTAGCCATGGGAAAAAGTCCCAAAGAGGTGACTTCTGTCCAATTC
AAGCCACAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTTATCAATGAGCATGAGGTTGG
CTCAGAGCATGTACTCTTTGCTATTTTGCTCAATCCGGATATTATGGCCAGTCGTCTGTTAGAATTGGCAGGCTACAGGC
TCAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGCAAGGAA
ACTATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGAGTAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACAAGAGACCTGACAGAGATGGCAAGACAGGGCTTATTAGAGCCAGTCATCG
GACGAGAAAAAGAGGTGTCACGTATGGTTCAGGTGCTTTGTCGTAAGACGAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTCGGAAAAACTGCTCTAGCTTATGGCTTAGCGCAGCGAATTGCTAATGGAGCCATTCCTTATGAATTACAAGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGTAAGATCATTTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACACTTGATGCCGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGCGCTACAAC
TCAAGAGGAATATCAAAAGCACATTGAAAAGGACGCAGCCCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTTGAGGACGCTTATCAGATTTTGCTTGGCTTGAAGCCTTCCTATGAACAGTACCATAATGTAACAATCTCTGATACA
GCTGTCCATACTGCTGTGAAGCTGGCTCGGCGCTATTTGACAAGTAAGCAGCTTCCAGACTCAGCGATTGATCTGCTTGA
TGAAGCCAGTGCGATGGTGCAAAGTATGGTTAAAAAGACGCAGCCTGACTTTATAACACCGCTTGATCAAGCCCTGCTTG
ATGGTGATATGAGCAAGGTGTCAGCCCTTTTAGTCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTTACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACTGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGATGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAGGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAAAAGGTGGTCTTCCATAGC
CTAACACAGGAAAACATGCGTGATGTGGTGAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAAGCTGGTTACGATGTTGAAATGGGCGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGAAAACTAGCTTTTGATATCGCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB C0M7D2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

74.662

100

0.747

  clpC Streptococcus thermophilus LMD-9

72.059

100

0.723

  clpC Streptococcus thermophilus LMG 18311

71.814

100

0.721

  clpC Streptococcus pneumoniae Rx1

65.602

100

0.657

  clpC Streptococcus pneumoniae D39

65.602

100

0.657

  clpC Streptococcus pneumoniae TIGR4

65.479

100

0.656

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.743

100

0.501

  clpC Bacillus subtilis subsp. subtilis str. 168

43.735

100

0.446

  clpE Streptococcus mutans UA159

45.356

79.459

0.36


Multiple sequence alignment