Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STH_RS15550 Genome accession   NC_006177
Coordinates   3327414..3328784 (-) Length   456 a.a.
NCBI ID   WP_011197241.1    Uniprot ID   -
Organism   Symbiobacterium thermophilum IAM 14863     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3322414..3333784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH_RS15515 (STH3122) ispF 3322506..3322979 (-) 474 WP_011197235.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  STH_RS15520 (STH3123) ispD 3322973..3323683 (-) 711 WP_011197236.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  STH_RS15525 (STH3124) - 3323680..3324789 (-) 1110 WP_011197237.1 PIN/TRAM domain-containing protein -
  STH_RS15530 (STH3125) - 3324932..3325411 (-) 480 WP_011197238.1 CarD family transcriptional regulator -
  STH_RS15540 (STH3126) - 3325875..3326273 (+) 399 WP_011197239.1 hypothetical protein -
  STH_RS15545 (STH3127) disA 3326336..3327391 (-) 1056 WP_011197240.1 DNA integrity scanning diadenylate cyclase DisA -
  STH_RS15550 (STH3128) radA 3327414..3328784 (-) 1371 WP_011197241.1 DNA repair protein RadA Machinery gene
  STH_RS15555 (STH3129) - 3328957..3330027 (-) 1071 WP_011197242.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  STH_RS15560 (STH3130) - 3330437..3330655 (-) 219 WP_043714341.1 DUF3343 domain-containing protein -
  STH_RS15565 (STH3131) - 3330660..3331829 (-) 1170 WP_011197244.1 aminotransferase class V-fold PLP-dependent enzyme -
  STH_RS15570 (STH3132) yedE 3331826..3332953 (-) 1128 WP_011197245.1 YedE family putative selenium transporter -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48679.11 Da        Isoelectric Point: 6.3197

>NTDB_id=23534 STH_RS15550 WP_011197241.1 3327414..3328784(-) (radA) [Symbiobacterium thermophilum IAM 14863]
MAKSRSAFFCQECGYESPRWMGRCPGCGAWNTMVEEPVNPPGGRGLLTSDPGTGGPPLAIGEVETEDAQRLETGMDELDR
VLGGGIVPGSFVLVGGDPGIGKSTLLLQLAAGVARQHGTVLYASGEESARQIRMRADRLGTIHPRLLVLAETNLEAIAHH
AAQVAPRLLIVDSIQTVFRPDLPSAPGSVSQVRECAAQLLRVAKGQNLAIFIVGHVTKEGSLAGPRVLEHIVDTVLYFEG
DRHASFRILRAVKNRFGSTNEIGIFEMRDAGLAPVGNASQLFLAERPVEVAGSVVMPAMEGTRPLLVEVQALVSASTFVT
PRRTAEGIDLNRLQLIIAVLEKRVGLLLGNHDAYVKVAGGVRLAEPAIDLALAVALASSFRDQPPDPRTVVVGEVGLAGE
VRAVSRIDQRIREAEKMGFDRMVLPRANLRSLSMKTDVELVGVETVMEGLEAALGR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=23534 STH_RS15550 WP_011197241.1 3327414..3328784(-) (radA) [Symbiobacterium thermophilum IAM 14863]
TTGGCGAAGTCCAGGAGCGCCTTCTTTTGTCAGGAGTGCGGCTACGAGTCGCCGCGGTGGATGGGGCGGTGCCCCGGCTG
CGGTGCCTGGAACACCATGGTGGAGGAGCCCGTGAACCCGCCGGGCGGGCGGGGCCTGCTGACGTCTGACCCGGGCACGG
GCGGGCCGCCGCTGGCGATCGGGGAGGTGGAGACCGAGGACGCGCAGCGGCTGGAGACGGGCATGGACGAGCTGGACCGG
GTGCTGGGCGGCGGCATCGTGCCCGGCTCTTTCGTGCTGGTGGGCGGCGACCCGGGCATCGGCAAGTCGACCCTGCTGCT
GCAGCTGGCGGCCGGCGTGGCCCGGCAGCACGGCACCGTGCTCTATGCCTCCGGCGAGGAGTCCGCCAGGCAGATCCGGA
TGCGAGCCGACCGGTTGGGGACCATCCACCCGCGCCTTCTGGTGCTGGCCGAGACGAACCTGGAGGCCATCGCGCACCAC
GCGGCCCAGGTGGCCCCCCGGCTGCTCATCGTCGACTCCATCCAGACGGTCTTCCGCCCCGACCTGCCTTCCGCCCCCGG
CTCCGTCAGCCAGGTGCGGGAGTGCGCCGCCCAGCTGCTCCGGGTGGCGAAGGGGCAGAACCTCGCCATCTTTATCGTGG
GCCACGTCACCAAAGAGGGCTCCCTGGCCGGCCCGCGGGTACTGGAGCATATCGTGGACACCGTTCTCTACTTCGAGGGC
GACCGGCACGCCAGCTTCCGGATCCTGCGCGCGGTGAAAAACCGCTTCGGCTCCACGAATGAGATTGGCATCTTCGAGAT
GCGGGACGCGGGCCTGGCGCCGGTCGGCAACGCCTCCCAGCTGTTCCTGGCGGAGCGGCCGGTGGAGGTGGCGGGCTCCG
TGGTCATGCCGGCGATGGAGGGCACCCGGCCGCTCCTGGTGGAGGTGCAGGCGCTGGTGAGCGCGTCCACCTTCGTGACG
CCGCGGCGGACCGCGGAGGGCATCGACCTGAACCGGCTGCAGCTGATCATCGCGGTGCTGGAGAAGCGGGTGGGACTGCT
GCTGGGCAACCATGACGCCTACGTCAAGGTGGCGGGCGGGGTGCGGCTGGCGGAGCCCGCGATCGACCTGGCCCTGGCGG
TGGCCCTGGCCTCCAGCTTCCGGGACCAGCCTCCCGACCCGCGTACGGTGGTCGTGGGCGAGGTCGGGCTGGCCGGCGAG
GTGCGGGCGGTGTCCCGCATCGACCAGCGCATTCGCGAGGCCGAGAAGATGGGTTTCGACCGCATGGTATTGCCACGGGC
GAACCTCCGTAGCCTAAGCATGAAGACCGACGTGGAACTGGTCGGCGTGGAGACGGTGATGGAAGGACTCGAGGCGGCCC
TCGGCCGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

59.737

100

0.599
  radA Streptococcus pneumoniae Rx1

55.286

99.561

0.55
  radA Streptococcus pneumoniae D39

55.286

99.561

0.55
  radA Streptococcus pneumoniae R6

55.286

99.561

0.55
  radA Streptococcus pneumoniae TIGR4

55.286

99.561

0.55
  radA Streptococcus mitis SK321

55.286

99.561

0.55
  radA Streptococcus mitis NCTC 12261

55.286

99.561

0.55

Multiple sequence alignment