Detailed information NTG0235322

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MJ68_RS10015
• Genome accession: NZ_CP027544
• Coordinates: 1767560..1768552 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2013C-3264
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1762560..1773552

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MJ68_RS09990	ygbN	1763214..1764578 (+)	1365	WP_000104429.1	GntP family transporter	-
MJ68_RS09995	-	1764618..1764854 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
MJ68_RS10000	-	1764865..1766292 (-)	1428	WP_000863214.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
MJ68_RS10005	-	1766292..1766885 (-)	594	WP_000767708.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
MJ68_RS10010	-	1767032..1767439 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
MJ68_RS10015	rpoS	1767560..1768552 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
MJ68_RS10020	nlpD	1768615..1769709 (-)	1095	WP_342341910.1	murein hydrolase activator NlpD	-
MJ68_RS10025	pcm	1769894..1770520 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
MJ68_RS10030	surE	1770514..1771275 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
MJ68_RS10035	truD	1771256..1772305 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
MJ68_RS10040	ispF	1772302..1772781 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MJ68_RS10045	ispD	1772781..1773491 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=235322 MJ68_RS10015 WP_000081550.1 1767560..1768552(-) (rpoS) [Escherichia coli strain 2013C-3264]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=235322 MJ68_RS10015 WP_000081550.1 1767560..1768552(-) (rpoS) [Escherichia coli strain 2013C-3264]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715