Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPV_RS08875 Genome accession   NZ_CP027540
Coordinates   1678233..1678943 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain D39V     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673233..1683943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPV_RS08855 (SPV_1662) - 1673888..1674136 (-) 249 WP_000364990.1 YneF family protein -
  SPV_RS08860 (SPV_1663) treC 1674278..1675903 (-) 1626 WP_000171206.1 alpha,alpha-phosphotrehalase -
  SPV_RS08870 (SPV_1664) treP 1676081..1678048 (-) 1968 WP_162614078.1 PTS system trehalose-specific EIIBC component -
  SPV_RS08875 (SPV_1665) treR 1678233..1678943 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPV_RS08880 - 1679099..1680405 (+) 1307 Protein_1682 transposase -
  SPV_RS08885 (SPV_1667) - 1680480..1681406 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein -
  SPV_RS08890 (SPV_1668) amiE 1681417..1682484 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  SPV_RS08895 (SPV_1669) amiD 1682493..1683419 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=235261 SPV_RS08875 WP_000760673.1 1678233..1678943(+) (treR) [Streptococcus pneumoniae strain D39V]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=235261 SPV_RS08875 WP_000760673.1 1678233..1678943(+) (treR) [Streptococcus pneumoniae strain D39V]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTTCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593