Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AM386_RS23825 Genome accession   NZ_CP021960
Coordinates   4389926..4390522 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain AR_0139     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4384926..4395522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM386_RS23810 (AM386_24695) helD 4385134..4387188 (-) 2055 WP_004176653.1 DNA helicase IV -
  AM386_RS23815 (AM386_24700) - 4387313..4387759 (+) 447 WP_071570738.1 YccF domain-containing protein -
  AM386_RS23820 (AM386_24705) yccS 4387777..4389912 (+) 2136 WP_002898422.1 YccS family putative transporter -
  AM386_RS23825 (AM386_24710) sxy/tfoX 4389926..4390522 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  AM386_RS23835 (AM386_24720) sulA 4390871..4391380 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  AM386_RS23840 (AM386_24725) ompA 4391733..4392803 (+) 1071 WP_002898408.1 porin OmpA -
  AM386_RS23845 (AM386_24730) matP 4392935..4393387 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  AM386_RS23850 (AM386_24735) - 4393573..4395330 (+) 1758 WP_004191101.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=235228 AM386_RS23825 WP_004179217.1 4389926..4390522(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0139]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=235228 AM386_RS23825 WP_004179217.1 4389926..4390522(-) (sxy/tfoX) [Klebsiella pneumoniae strain AR_0139]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment