Detailed information NTG0235113

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM474_RS07470
• Genome accession: NZ_CP027538
• Coordinates: 1505132..1506136 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain AR_0095
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1500132..1511136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM474_RS07450 (AM474_07450)	-	1500615..1501622 (+)	1008	WP_034027119.1	TolB family protein	-
AM474_RS07460 (AM474_07460)	mutS	1501748..1504315 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
AM474_RS07465 (AM474_07465)	fdxA	1504382..1504705 (+)	324	WP_003092272.1	ferredoxin FdxA	-
AM474_RS07470 (AM474_07470)	rpoS	1505132..1506136 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
AM474_RS07475 (AM474_07475)	-	1506241..1507134 (-)	894	WP_009313547.1	peptidoglycan DD-metalloendopeptidase family protein	-
AM474_RS07480 (AM474_07480)	-	1507180..1507815 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AM474_RS07485 (AM474_07485)	surE	1507848..1508597 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AM474_RS07490 (AM474_07490)	truD	1508585..1509652 (-)	1068	WP_003117490.1	tRNA pseudouridine(13) synthase TruD	-
AM474_RS07495 (AM474_07495)	ispF	1509649..1510122 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM474_RS07500 (AM474_07500)	fghA	1510193..1511044 (-)	852	WP_034027120.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=235113 AM474_RS07470 WP_003113871.1 1505132..1506136(-) (rpoS) [Pseudomonas aeruginosa strain AR_0095]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=235113 AM474_RS07470 WP_003113871.1 1505132..1506136(-) (rpoS) [Pseudomonas aeruginosa strain AR_0095]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAACTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTCCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGATGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653