Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   AM474_RS04960 Genome accession   NZ_CP027538
Coordinates   984459..984788 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AR_0095     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 979459..989788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM474_RS04945 (AM474_04945) uvrB 980846..982858 (-) 2013 WP_003110848.1 excinuclease ABC subunit UvrB Machinery gene
  AM474_RS04950 (AM474_04950) - 983046..984242 (+) 1197 WP_003110849.1 amino acid aminotransferase -
  AM474_RS04960 (AM474_04960) comEA/comE1 984459..984788 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  AM474_RS04965 (AM474_04965) - 984979..986976 (-) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  AM474_RS04970 (AM474_04970) - 986989..988014 (-) 1026 WP_023093916.1 MraY family glycosyltransferase -
  AM474_RS04975 (AM474_04975) - 988115..989059 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=235109 AM474_RS04960 WP_003091430.1 984459..984788(-) (comEA/comE1) [Pseudomonas aeruginosa strain AR_0095]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=235109 AM474_RS04960 WP_003091430.1 984459..984788(-) (comEA/comE1) [Pseudomonas aeruginosa strain AR_0095]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment