Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AM460_RS14245 Genome accession   NZ_CP027534
Coordinates   2792532..2793959 (-) Length   475 a.a.
NCBI ID   WP_000980556.1    Uniprot ID   -
Organism   Escherichia coli strain AR_0081     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2787532..2798959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM460_RS14200 (AM460_14200) yefM 2787737..2787988 (+) 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  AM460_RS14205 (AM460_14205) yoeB 2787985..2788239 (+) 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  AM460_RS14210 (AM460_14210) yeeZ 2788322..2789146 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  AM460_RS14215 (AM460_14215) yeeY 2789192..2790121 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  AM460_RS14220 (AM460_14220) yoeI 2790336..2790398 (+) 63 WP_010723108.1 membrane protein YoeI -
  AM460_RS14225 (AM460_14225) plaP 2790388..2791746 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  AM460_RS14235 (AM460_14235) tnpA 2791963..2792421 (+) 459 WP_001531805.1 IS200/IS605-like element IS200C family transposase -
  AM460_RS14245 (AM460_14245) sbcB 2792532..2793959 (-) 1428 WP_000980556.1 exodeoxyribonuclease I Machinery gene
  AM460_RS14250 (AM460_14250) dacD 2794168..2795334 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AM460_RS14255 (AM460_14255) sbmC 2795453..2795926 (+) 474 WP_001105368.1 DNA gyrase inhibitor SbmC -
  AM460_RS14260 (AM460_14260) yeeA 2796124..2797182 (+) 1059 WP_001200889.1 FUSC family protein -
  AM460_RS14265 (AM460_14265) tmaR 2797354..2797683 (+) 330 WP_000450409.1 DUF496 family protein -
  AM460_RS29220 (AM460_14270) - 2797784..2797966 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  AM460_RS28875 - 2798086..2798166 (+) 81 WP_023441679.1 hypothetical protein -
  AM460_RS28470 - 2798455..2798535 (-) 81 Protein_2626 hypothetical protein -
  AM460_RS14285 (AM460_14280) yeeW 2798581..2798775 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54437.70 Da        Isoelectric Point: 5.4700

>NTDB_id=235069 AM460_RS14245 WP_000980556.1 2792532..2793959(-) (sbcB) [Escherichia coli strain AR_0081]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=235069 AM460_RS14245 WP_000980556.1 2792532..2793959(-) (sbcB) [Escherichia coli strain AR_0081]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTAGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTTTGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583