Detailed information NTG0235056

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AM460_RS10550
• Genome accession: NZ_CP027534
• Coordinates: 2043890..2044882 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR_0081
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2038890..2049882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM460_RS10520 (AM460_10520)	ispD	2038951..2039661 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AM460_RS10525 (AM460_10525)	ispF	2039661..2040140 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AM460_RS10530 (AM460_10530)	truD	2040137..2041186 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AM460_RS10535 (AM460_10535)	surE	2041167..2041928 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AM460_RS10540 (AM460_10540)	pcm	2041922..2042548 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AM460_RS10545 (AM460_10545)	nlpD	2042733..2043827 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
AM460_RS10550 (AM460_10550)	rpoS	2043890..2044882 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AM460_RS10555 (AM460_10555)	-	2045053..2045604 (-)	552	WP_001179444.1	flavodoxin family protein	-
AM460_RS10560 (AM460_10560)	-	2045829..2046872 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AM460_RS10565 (AM460_10565)	ygbN	2047015..2048379 (-)	1365	WP_000104433.1	GntP family transporter	-
AM460_RS10570 (AM460_10570)	ygbM	2048468..2049244 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=235056 AM460_RS10550 WP_000081550.1 2043890..2044882(+) (rpoS) [Escherichia coli strain AR_0081]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=235056 AM460_RS10550 WP_000081550.1 2043890..2044882(+) (rpoS) [Escherichia coli strain AR_0081]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715