Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   S101392_RS14470 Genome accession   NZ_CP021921
Coordinates   2786547..2787293 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2781547..2792293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS14445 (S101392_02872) mreC 2781953..2782825 (-) 873 WP_088326664.1 rod shape-determining protein MreC -
  S101392_RS14450 (S101392_02873) mreB 2782856..2783869 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  S101392_RS14455 (S101392_02874) radC 2783961..2784656 (-) 696 WP_003246034.1 DNA repair protein RadC -
  S101392_RS14460 (S101392_02875) maf 2784693..2785262 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  S101392_RS14465 (S101392_02876) spoIIB 2785415..2786413 (-) 999 WP_003229644.1 stage II sporulation protein SpoIIB -
  S101392_RS14470 (S101392_02877) comC 2786547..2787293 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  S101392_RS14475 (S101392_02878) folC 2787433..2788725 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  S101392_RS14480 (S101392_02879) valS 2788785..2791427 (-) 2643 WP_088326665.1 valine--tRNA ligase -
  S101392_RS14485 (S101392_02880) - 2791875..2792066 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=234981 S101392_RS14470 WP_072592551.1 2786547..2787293(-) (comC) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=234981 S101392_RS14470 WP_072592551.1 2786547..2787293(-) (comC) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment