Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   S101392_RS13170 Genome accession   NZ_CP021921
Coordinates   2558114..2558881 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2553114..2563881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS13150 (S101392_02617) ppsR 2553288..2554100 (-) 813 WP_088326519.1 pyruvate, water dikinase regulatory protein -
  S101392_RS13155 (S101392_02618) ccpN 2554126..2554764 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  S101392_RS13160 (S101392_02619) glyS 2554897..2556936 (-) 2040 WP_088326522.1 glycine--tRNA ligase subunit beta -
  S101392_RS13165 (S101392_02620) glyQ 2556929..2557816 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  S101392_RS13170 (S101392_02621) recO 2558114..2558881 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  S101392_RS13175 (S101392_02622) yqzL 2558918..2559061 (-) 144 WP_003230053.1 YqzL family protein -
  S101392_RS13180 (S101392_02623) era 2559209..2560114 (-) 906 WP_003230051.1 GTPase Era -
  S101392_RS13185 (S101392_02624) - 2560095..2560505 (-) 411 WP_003230049.1 cytidine deaminase -
  S101392_RS13190 (S101392_02625) unpK 2560624..2560995 (-) 372 WP_080529555.1 diacylglycerol kinase family protein -
  S101392_RS13195 (S101392_02626) ybeY 2560976..2561449 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  S101392_RS13200 (S101392_02627) pgpH 2561450..2563585 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=234973 S101392_RS13170 WP_003230055.1 2558114..2558881(-) (recO) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=234973 S101392_RS13170 WP_003230055.1 2558114..2558881(-) (recO) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment