Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   S101392_RS12635 Genome accession   NZ_CP021921
Coordinates   2468222..2469025 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2463222..2474025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS12615 (S101392_02510) glpQB 2464358..2465089 (-) 732 WP_038429286.1 glycerophosphodiester phosphodiesterase -
  S101392_RS12620 (S101392_02511) yqiI 2465168..2465788 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  S101392_RS12625 (S101392_02512) - 2465808..2466104 (-) 297 WP_014480225.1 hypothetical protein -
  S101392_RS21500 - 2466412..2466564 (+) 153 WP_014480226.1 hypothetical protein -
  S101392_RS12630 (S101392_02513) yqiG 2466637..2467755 (+) 1119 WP_088326454.1 NADH-dependent flavin oxidoreductase -
  S101392_RS12635 (S101392_02514) spo0A 2468222..2469025 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  S101392_RS12640 (S101392_02515) spoIVB 2469301..2470581 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  S101392_RS12645 (S101392_02516) recN 2470756..2472486 (-) 1731 WP_088326456.1 DNA repair protein RecN Machinery gene
  S101392_RS12650 (S101392_02517) argR 2472523..2472972 (-) 450 WP_003230265.1 arginine repressor ArgR -
  S101392_RS12655 (S101392_02518) yqxC 2473070..2473915 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=234962 S101392_RS12635 WP_003226427.1 2468222..2469025(-) (spo0A) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=234962 S101392_RS12635 WP_003226427.1 2468222..2469025(-) (spo0A) [Bacillus subtilis subsp. subtilis strain SRCM101392]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment