Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   S101392_RS11595 Genome accession   NZ_CP021921
Coordinates   2265792..2266412 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2260792..2271412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS11555 (S101392_02299) ptsA 2261920..2262426 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  S101392_RS11560 (S101392_02300) ypqA 2262564..2262983 (+) 420 WP_029726787.1 Hsp20/alpha crystallin family protein -
  S101392_RS11565 (S101392_02301) sppG 2263004..2263381 (-) 378 WP_015251832.1 YppG family protein -
  S101392_RS11570 (S101392_02302) yppF 2263569..2263757 (+) 189 WP_003230690.1 YppF family protein -
  S101392_RS11575 (S101392_02303) yppE 2263799..2264170 (-) 372 WP_029726786.1 YppE family protein -
  S101392_RS11580 (S101392_02304) yppD 2264216..2264461 (-) 246 WP_015251831.1 YppD family protein -
  S101392_RS11585 (S101392_02305) sspM 2264660..2264764 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  S101392_RS11590 (S101392_02306) yppC 2264789..2265751 (-) 963 WP_029726785.1 DUF2515 domain-containing protein -
  S101392_RS11595 (S101392_02307) recU 2265792..2266412 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  S101392_RS11600 (S101392_02308) ponA 2266434..2269178 (+) 2745 WP_088326351.1 PBP1A family penicillin-binding protein -
  S101392_RS11605 (S101392_02309) ypoC 2269254..2269748 (-) 495 WP_029726783.1 YpoC family protein -
  S101392_RS11610 (S101392_02310) nth 2269745..2270404 (-) 660 WP_009967580.1 endonuclease III -
  S101392_RS11615 (S101392_02311) dnaD 2270423..2271121 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=234961 S101392_RS11595 WP_004399067.1 2265792..2266412(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=234961 S101392_RS11595 WP_004399067.1 2265792..2266412(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM101392]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment