Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   S101392_RS05705 Genome accession   NZ_CP021921
Coordinates   1096516..1097094 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain SRCM101392     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091516..1102094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101392_RS05685 (S101392_01123) hemAT 1092027..1093325 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  S101392_RS05690 (S101392_01124) comW 1093464..1094993 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  S101392_RS05695 (S101392_01125) yhxC 1095105..1095962 (+) 858 WP_088325532.1 SDR family oxidoreductase -
  S101392_RS05700 (S101392_01126) yhzC 1095990..1096223 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  S101392_RS05705 (S101392_01127) comK 1096516..1097094 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  S101392_RS05710 (S101392_01128) yhxD 1097141..1098040 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  S101392_RS05715 (S101392_01129) yhjA 1098255..1098524 (+) 270 WP_024571730.1 excalibur calcium-binding domain-containing protein -
  S101392_RS05720 (S101392_01130) yhjB 1098567..1100036 (-) 1470 WP_033883083.1 sodium:solute symporter -
  S101392_RS05725 (S101392_01131) yhjC 1100033..1100233 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  S101392_RS05730 (S101392_01132) - 1100432..1100803 (-) 372 WP_014476361.1 hypothetical protein -
  S101392_RS05735 (S101392_01133) yhjE 1100955..1101578 (+) 624 WP_010886465.1 VTT domain-containing protein -
  S101392_RS05740 (S101392_01134) lepB 1101580..1102086 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=234942 S101392_RS05705 WP_003245329.1 1096516..1097094(+) (comK) [Bacillus subtilis subsp. subtilis strain SRCM101392]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=234942 S101392_RS05705 WP_003245329.1 1096516..1097094(+) (comK) [Bacillus subtilis subsp. subtilis strain SRCM101392]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCATTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment