Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   S101395_RS26895 Genome accession   NZ_CP021920
Coordinates   590941..591675 (+) Length   244 a.a.
NCBI ID   WP_006639263.1    Uniprot ID   M5P1P9
Organism   Bacillus sonorensis strain SRCM101395     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585941..596675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS03025 (S101395_00611) degS 586214..587371 (+) 1158 WP_006639267.1 sensor histidine kinase Regulator
  S101395_RS03030 (S101395_00612) degU 587453..588142 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  S101395_RS03035 (S101395_00613) - 588262..589104 (+) 843 WP_006639266.1 DegV family protein -
  S101395_RS03040 (S101395_00614) comFA 589297..590643 (+) 1347 WP_006639265.1 DEAD/DEAH box helicase Machinery gene
  S101395_RS03045 (S101395_00615) - 590700..590984 (+) 285 WP_006639264.1 late competence development ComFB family protein -
  S101395_RS26895 (S101395_00616) comFC 590941..591675 (+) 735 WP_006639263.1 ComF family protein Machinery gene
  S101395_RS03055 (S101395_00617) - 591733..592152 (+) 420 WP_006639262.1 TIGR03826 family flagellar region protein -
  S101395_RS03060 (S101395_00618) flgM 592232..592495 (+) 264 WP_006639261.1 flagellar biosynthesis anti-sigma factor FlgM -
  S101395_RS03065 (S101395_00619) - 592510..592992 (+) 483 WP_029419581.1 flagellar protein FlgN -
  S101395_RS03070 (S101395_00620) flgK 593010..594533 (+) 1524 WP_006639259.1 flagellar hook-associated protein FlgK -
  S101395_RS03075 (S101395_00621) flgL 594544..595455 (+) 912 WP_006639258.1 flagellar hook-associated protein FlgL -
  S101395_RS03080 (S101395_00622) - 595505..596071 (+) 567 WP_029419579.1 DUF6470 family protein -
  S101395_RS03085 (S101395_00623) fliW 596092..596523 (+) 432 WP_006639256.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27999.58 Da        Isoelectric Point: 9.7015

>NTDB_id=234924 S101395_RS26895 WP_006639263.1 590941..591675(+) (comFC) [Bacillus sonorensis strain SRCM101395]
MKIRIANNIRKEEDKLICLICEAPLLHSLSWRSFFFFKTEEKICRECKESFIKIKGSVCRKCGRPQSSEKLCPDCLKWEA
NPKTCGLLQQNRSVYVYNPFMKEVLARFKFRGDAELVYAFAPSFSRAFQTYCSHSDIALVPIPLSEERKKERGFNQAERL
ASLLNRPIMQPLIRTENEKQSKKSKAERLKQKTVFKTEKGSVKGLNVMLIDDLYTTGATLHHAAECLKADGEANTVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=234924 S101395_RS26895 WP_006639263.1 590941..591675(+) (comFC) [Bacillus sonorensis strain SRCM101395]
ATGAAAATCCGCATTGCGAACAACATAAGAAAGGAAGAGGATAAGCTGATTTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGTTCTTTTTTCTTTTTCAAGACGGAAGAAAAAATATGCAGAGAATGTAAAGAGAGCTTTATCAAAA
TAAAAGGGAGTGTGTGCCGCAAATGCGGCCGGCCTCAAAGCAGCGAAAAGCTCTGCCCGGACTGTTTAAAATGGGAAGCA
AATCCGAAAACCTGCGGCCTTCTCCAACAAAACCGCTCCGTATATGTCTATAATCCTTTCATGAAAGAAGTTCTCGCCCG
TTTTAAGTTCAGGGGCGACGCAGAACTCGTCTACGCATTTGCTCCTTCATTTAGCCGCGCCTTTCAAACATACTGCTCCC
ATTCAGATATCGCACTGGTACCGATACCCCTCAGTGAAGAACGCAAAAAGGAAAGAGGCTTTAACCAGGCGGAAAGGCTT
GCTTCCTTATTGAACAGGCCTATCATGCAGCCATTGATCAGAACGGAAAATGAGAAACAGTCGAAAAAAAGCAAGGCGGA
GCGTCTTAAACAGAAAACGGTTTTCAAGACGGAGAAGGGTTCTGTAAAAGGTTTGAACGTCATGCTGATTGATGATTTGT
ATACGACTGGGGCCACTCTTCATCATGCGGCTGAATGTCTGAAAGCGGACGGGGAAGCAAATACAGTATCATCCTACACT
TTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P1P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.913

94.262

0.508

Multiple sequence alignment