Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   S101395_RS16290 Genome accession   NZ_CP021920
Coordinates   3099552..3099839 (-) Length   95 a.a.
NCBI ID   WP_006638346.1    Uniprot ID   M5P373
Organism   Bacillus sonorensis strain SRCM101395     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3094552..3104839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS16275 (S101395_03284) ade 3095421..3097133 (-) 1713 WP_373870198.1 adenine deaminase -
  S101395_RS16280 (S101395_03285) - 3097282..3097950 (-) 669 WP_088273125.1 potassium channel family protein -
  S101395_RS16285 (S101395_03286) - 3098016..3099347 (-) 1332 WP_006638345.1 ATP-binding protein -
  S101395_RS16290 (S101395_03287) abrB 3099552..3099839 (-) 288 WP_006638346.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  S101395_RS16295 (S101395_03288) mreBH 3100141..3101148 (+) 1008 WP_006638347.1 rod-share determining protein MreBH -
  S101395_RS16300 (S101395_03289) - 3101221..3101352 (+) 132 WP_006638348.1 protein YkpC -
  S101395_RS16305 (S101395_03290) - 3101439..3102671 (+) 1233 WP_006638349.1 aminopeptidase -
  S101395_RS16310 (S101395_03291) - 3102824..3103198 (-) 375 WP_006638350.1 YybH family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10696.53 Da        Isoelectric Point: 7.1666

>NTDB_id=234899 S101395_RS16290 WP_006638346.1 3099552..3099839(-) (abrB) [Bacillus sonorensis strain SRCM101395]
MKSIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDKDKIVLQKYKPHGVCLITGEITSENREYANGKITLSPEGAE
MLLEELKTALHQAKS

Nucleotide


Download         Length: 288 bp        

>NTDB_id=234899 S101395_RS16290 WP_006638346.1 3099552..3099839(-) (abrB) [Bacillus sonorensis strain SRCM101395]
TTGAAATCAATAGGAGTTGTGAGAAAAGTAGATGAACTCGGCCGCATCGTGATGCCGATTGAGTTAAGAAGGGCGCTGGA
TATTTCAATAAAAGACAGCATTGAGTTTTTTGTAGATAAGGATAAAATTGTTTTACAAAAATATAAACCCCATGGGGTCT
GCCTGATAACCGGAGAGATTACATCCGAAAACCGCGAATATGCAAACGGAAAAATCACGCTGAGCCCAGAGGGCGCTGAA
ATGCTGTTGGAAGAACTGAAAACTGCGCTGCATCAGGCAAAATCCTGA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-87)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P373

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537

Multiple sequence alignment