Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   S101395_RS08955 Genome accession   NZ_CP021920
Coordinates   1696253..1697023 (+) Length   256 a.a.
NCBI ID   WP_006637599.1    Uniprot ID   -
Organism   Bacillus sonorensis strain SRCM101395     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1691253..1702023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS08925 (S101395_01809) - 1691553..1693643 (+) 2091 WP_051056678.1 HD family phosphohydrolase -
  S101395_RS08930 (S101395_01810) ybeY 1693640..1694116 (+) 477 WP_006637604.1 rRNA maturation RNase YbeY -
  S101395_RS08935 (S101395_01811) - 1694094..1694474 (+) 381 WP_006637603.1 diacylglycerol kinase family protein -
  S101395_RS08940 (S101395_01812) - 1694392..1695024 (+) 633 WP_255130748.1 cytidine deaminase -
  S101395_RS08945 (S101395_01813) era 1695005..1695910 (+) 906 WP_006637601.1 GTPase Era -
  S101395_RS08950 (S101395_01814) - 1696071..1696214 (+) 144 WP_006637600.1 YqzL family protein -
  S101395_RS08955 (S101395_01815) recO 1696253..1697023 (+) 771 WP_006637599.1 DNA repair protein RecO Machinery gene
  S101395_RS08960 (S101395_01816) glyQ 1697360..1698247 (+) 888 WP_006637598.1 glycine--tRNA ligase subunit alpha -
  S101395_RS08965 (S101395_01817) glyS 1698240..1700279 (+) 2040 WP_006637597.1 glycine--tRNA ligase subunit beta -
  S101395_RS08970 (S101395_01818) - 1700486..1701124 (+) 639 WP_006637596.1 helix-turn-helix transcriptional regulator -
  S101395_RS08975 (S101395_01819) - 1701148..1701960 (+) 813 WP_006637595.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29407.16 Da        Isoelectric Point: 9.2713

>NTDB_id=234885 S101395_RS08955 WP_006637599.1 1696253..1697023(+) (recO) [Bacillus sonorensis strain SRCM101395]
MLTKCEGIVLRTNDYGETNKILTILTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMLESMRN
IREDLFLTAHAAYIAELVDKGTDEKKPNPFLFELLLQSMRRLNDGTDPDIITNLIEVKMLGVIGLYPELNECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRVPMSPASARLLRLLFYFDLSRLGNVSVKRETKEELKRVIQLYYDEYSGIFLKSRRFM
EQMDNMKKMLGNENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=234885 S101395_RS08955 WP_006637599.1 1696253..1697023(+) (recO) [Bacillus sonorensis strain SRCM101395]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACGAACGATTATGGTGAAACCAATAAAATTTTGACAATTTTGACAAG
GGAGCATGGGAAAATCGGTGTACTGGCAAGAGGCGCAAAAAAACCGAACAGCCGCTTGTCGGCTATTTCCCAGCCCTTTC
TCTACGCTTCGTTTTTATTTCGGAAATCGTCCGGACTCGGTACGCTTGAGCAGGGCGAAATGCTTGAAAGCATGCGGAAT
ATTCGCGAGGACCTTTTTTTAACGGCGCATGCCGCTTATATCGCCGAATTGGTTGACAAAGGCACGGATGAAAAGAAACC
GAACCCGTTTTTATTCGAACTGCTTCTTCAATCGATGAGAAGGCTGAATGACGGGACTGATCCGGACATCATTACAAACC
TGATCGAAGTCAAAATGCTCGGCGTAATCGGGCTTTATCCGGAATTAAATGAATGCGTCCATTGCAAGAGCAAAGACGGA
ACATTCCATTTTTCAATCCGCGACAACGGCTTTATATGCCATCGCTGCTTTGCGAAGGACCCTTATCGGGTGCCGATGTC
TCCCGCTTCAGCCAGGCTTTTGAGACTGCTTTTTTATTTTGACCTGTCAAGGCTCGGGAATGTATCGGTAAAACGTGAAA
CAAAGGAAGAGCTGAAAAGAGTCATCCAGCTCTATTATGACGAGTACTCGGGAATTTTTCTGAAATCGCGGCGCTTTATG
GAACAGATGGACAATATGAAAAAAATGCTCGGCAATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.953

100

0.77

Multiple sequence alignment