Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   S101395_RS00020 Genome accession   NZ_CP021920
Coordinates   3070..4182 (+) Length   370 a.a.
NCBI ID   WP_006639836.1    Uniprot ID   M5P3D1
Organism   Bacillus sonorensis strain SRCM101395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101395_RS00005 (S101395_00001) dnaA 1..1344 (+) 1344 WP_006639833.1 chromosomal replication initiator protein DnaA -
  S101395_RS00010 (S101395_00002) dnaN 1532..2668 (+) 1137 WP_006639834.1 DNA polymerase III subunit beta -
  S101395_RS00015 (S101395_00003) yaaA 2838..3053 (+) 216 WP_006639835.1 S4 domain-containing protein YaaA -
  S101395_RS00020 (S101395_00004) recF 3070..4182 (+) 1113 WP_006639836.1 DNA replication/repair protein RecF Machinery gene
  S101395_RS00025 remB 4200..4442 (+) 243 WP_006639837.1 extracellular matrix regulator RemB -
  S101395_RS00030 (S101395_00005) gyrB 4502..6415 (+) 1914 WP_006639838.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  S101395_RS00035 (S101395_00006) gyrA 6606..9080 (+) 2475 WP_006639839.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42437.33 Da        Isoelectric Point: 6.6710

>NTDB_id=234860 S101395_RS00020 WP_006639836.1 3070..4182(+) (recF) [Bacillus sonorensis strain SRCM101395]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGRVQTFVTTTSVDGIDHQTLNEAEIFRVANGTLLD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=234860 S101395_RS00020 WP_006639836.1 3070..4182(+) (recF) [Bacillus sonorensis strain SRCM101395]
TTGTACATCCAAAATCTTACATTATCATCTTACCGTAATTATGAACGCCTTGATCTCCAATTCGAAAACAAAGTGAACGT
GATTATCGGAGAAAACGCCCAAGGCAAGACAAATCTGATGGAAGCGATTTACGTACTTGCGATGGCAAAGTCCCATCGAA
CGTCAAATGACAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTCCC
GTTCCCATCCAGCTTGTCATTTCGAAAAAGGGAAAAAAAGGCAAGGTCAATCATATTGAACAACAGAAACTGAGCCAGTA
TGTCGGGGCTGTAAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAGGTATCACCCGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTCTCACAGCGG
AATCATTTCTTGAAGCAGCTTCAAACAAGAAAACAGACCGATCAAACGATGCTTGATGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGTCTTCAATTTGTTGATCAGCTTGAAAAATGGGCACAGCCTATCCATTCCGGAA
TTTCAAGAGGTCTTGAAGAATTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGTGTATCCCTTTCAGGCCCCCACAG
GGATGATGTTCTTTTCTACGTCAATGGCCGCGATGTGCAGACTTACGGATCACAGGGCCAGCAGCGTACGACGGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCATTTGCTCAACACCATTCAAGGCCGTGTTCAAACCTTCGTAACGACGACGAGCGT
TGATGGAATTGATCATCAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGCAAATGGCACGCTATTGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P3D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

88.618

99.73

0.884

Multiple sequence alignment