Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAF93_RS30185 Genome accession   NZ_CP027472
Coordinates   5580470..5580985 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3050     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5575470..5585985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF93_RS30145 csrA 5576330..5576515 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AAF93_RS30170 yqaB 5577700..5578266 (+) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AAF93_RS30175 yqaA 5578263..5578691 (+) 429 WP_001287457.1 YqaA family protein -
  AAF93_RS30180 gshA 5578764..5580320 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AAF93_RS30185 luxS 5580470..5580985 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AAF93_RS30190 emrB 5581049..5582587 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AAF93_RS30195 emrA 5582604..5583776 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AAF93_RS30200 emrR 5583903..5584433 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AAF93_RS30205 ygaH 5584524..5584859 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AAF93_RS30210 ygaZ 5584849..5585586 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=234852 AAF93_RS30185 WP_001130207.1 5580470..5580985(+) (luxS) [Escherichia coli strain 2014C-3050]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=234852 AAF93_RS30185 WP_001130207.1 5580470..5580985(+) (luxS) [Escherichia coli strain 2014C-3050]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731