Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | CDO84_RS20515 | Genome accession | NZ_CP021911 |
| Coordinates | 4032967..4033257 (-) | Length | 96 a.a. |
| NCBI ID | WP_003226760.1 | Uniprot ID | A0A7G9PCZ4 |
| Organism | Bacillus sp. MD-5 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4027967..4038257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO84_RS20475 (CDO84_20475) | darA | 4027990..4028319 (+) | 330 | WP_003242755.1 | cyclic di-AMP receptor DarA | - |
| CDO84_RS20480 (CDO84_20480) | - | 4028332..4028772 (+) | 441 | WP_040081086.1 | YaaR family protein | - |
| CDO84_RS20485 (CDO84_20485) | holB | 4028784..4029773 (+) | 990 | WP_014662475.1 | DNA polymerase III subunit delta' | - |
| CDO84_RS20490 (CDO84_20490) | ricT | 4029776..4030603 (+) | 828 | WP_003226767.1 | competence/sporulation regulator complex protein RicT | - |
| CDO84_RS20495 (CDO84_20495) | yabA | 4030618..4030977 (+) | 360 | WP_003218308.1 | replication initiation-control protein YabA | - |
| CDO84_RS20500 (CDO84_20500) | - | 4031036..4031779 (+) | 744 | WP_040081085.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| CDO84_RS20505 (CDO84_20505) | - | 4031766..4032065 (+) | 300 | WP_014662477.1 | GIY-YIG nuclease family protein | - |
| CDO84_RS20510 (CDO84_20510) | rsmI | 4032040..4032918 (+) | 879 | WP_040081083.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| CDO84_RS20515 (CDO84_20515) | abrB | 4032967..4033257 (-) | 291 | WP_003226760.1 | transition state genes transcriptional regulator AbrB | Regulator |
| CDO84_RS20520 (CDO84_20520) | metG | 4033752..4035746 (+) | 1995 | WP_040081081.1 | methionine--tRNA ligase | - |
| CDO84_RS20525 (CDO84_20525) | - | 4035825..4036592 (+) | 768 | WP_014475570.1 | TatD family hydrolase | - |
| CDO84_RS20530 (CDO84_20530) | - | 4036748..4038061 (+) | 1314 | WP_040081079.1 | ubiquitin-like domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10772.62 Da Isoelectric Point: 6.3482
>NTDB_id=234842 CDO84_RS20515 WP_003226760.1 4032967..4033257(-) (abrB) [Bacillus sp. MD-5]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK
Nucleotide
Download Length: 291 bp
>NTDB_id=234842 CDO84_RS20515 WP_003226760.1 4032967..4033257(-) (abrB) [Bacillus sp. MD-5]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTCGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTCGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |