Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   CDO84_RS20290 Genome accession   NZ_CP021911
Coordinates   3991545..3992657 (+) Length   370 a.a.
NCBI ID   WP_040081112.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3986545..3997657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS20265 (CDO84_20265) rnpA 3987255..3987605 (-) 351 WP_003242628.1 ribonuclease P protein component -
  CDO84_RS20270 (CDO84_20270) rpmH 3987757..3987891 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  CDO84_RS20275 (CDO84_20275) dnaA 3988518..3989858 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  CDO84_RS20280 (CDO84_20280) dnaN 3990047..3991183 (+) 1137 WP_040081113.1 DNA polymerase III subunit beta -
  CDO84_RS20285 (CDO84_20285) rlbA 3991314..3991529 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  CDO84_RS20290 (CDO84_20290) recF 3991545..3992657 (+) 1113 WP_040081112.1 DNA replication/repair protein RecF Machinery gene
  CDO84_RS20295 (CDO84_20295) remB 3992675..3992920 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  CDO84_RS20300 (CDO84_20300) gyrB 3992974..3994890 (+) 1917 WP_014662457.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  CDO84_RS20305 (CDO84_20305) gyrA 3995101..3997566 (+) 2466 WP_014662458.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42276.29 Da        Isoelectric Point: 7.3660

>NTDB_id=234840 CDO84_RS20290 WP_040081112.1 3991545..3992657(+) (recF) [Bacillus sp. MD-5]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPVHAGISRGLEELTLKYHTALDVSDPVDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=234840 CDO84_RS20290 WP_040081112.1 3991545..3992657(+) (recF) [Bacillus sp. MD-5]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGTGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCTATGGCGAAATCGCACAGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGACCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTAAAACAGCTGCAAACAAGAAAACAAACAGACCGGACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCCGTCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCTTGAAGTACCATACAGCTCTTGATGTATCAGATCCCGTAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATCGAGCGCGGTGTTACTTTGTCAGGGCCTCATCG
TGACGATGTCCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995

Multiple sequence alignment