Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CDO84_RS13205 Genome accession   NZ_CP021911
Coordinates   2603729..2604475 (-) Length   248 a.a.
NCBI ID   WP_082032956.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2598729..2609475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS13180 (CDO84_13180) mreC 2599136..2600008 (-) 873 WP_040082268.1 rod shape-determining protein MreC -
  CDO84_RS13185 (CDO84_13185) mreB 2600039..2601052 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  CDO84_RS13190 (CDO84_13190) radC 2601144..2601839 (-) 696 WP_014664850.1 DNA repair protein RadC -
  CDO84_RS13195 (CDO84_13195) - 2601876..2602445 (-) 570 WP_040082267.1 Maf family nucleotide pyrophosphatase -
  CDO84_RS13200 (CDO84_13200) - 2602597..2603595 (-) 999 WP_040082265.1 SPOR domain-containing protein -
  CDO84_RS13205 (CDO84_13205) comC 2603729..2604475 (-) 747 WP_082032956.1 A24 family peptidase Machinery gene
  CDO84_RS13210 (CDO84_13210) - 2604615..2605907 (-) 1293 WP_040082263.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CDO84_RS13215 (CDO84_13215) valS 2605967..2608609 (-) 2643 WP_014664855.1 valine--tRNA ligase -
  CDO84_RS13220 (CDO84_13220) - 2609057..2609248 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26568.10 Da        Isoelectric Point: 10.0061

>NTDB_id=234817 CDO84_RS13205 WP_082032956.1 2603729..2604475(-) (comC) [Bacillus sp. MD-5]
MLFILFIFGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRALTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGMSLELLTAVVFFSLLIIVAVTDLHYMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLALI
SAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKKQPLPFAPAIAAGSILTYLYGDSIIS
FYIKMASG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=234817 CDO84_RS13205 WP_082032956.1 2603729..2604475(-) (comC) [Bacillus sp. MD-5]
ATGCTATTCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGACGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGGCTTTGACCCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATGTCGCTGGAATTGTTAACCGCTGTCGTGTTTTTCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTATATGCTGATTCCAAATCGAATATTGATTTTTTTCCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCTGCAGCCGGATTTCTATTTCTGGCTTTAATT
TCAGCAATCACTCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTGATAGGCGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCCA
AAAAGCAGCCGCTTCCCTTTGCCCCTGCAATAGCGGCAGGGAGTATTTTAACCTATTTATACGGGGACTCTATCATTTCG
TTTTATATCAAAATGGCATCGGGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.548

100

0.935

Multiple sequence alignment