Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CDO84_RS11680 Genome accession   NZ_CP021911
Coordinates   2336468..2337235 (-) Length   255 a.a.
NCBI ID   WP_014664644.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2331468..2342235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS11660 (CDO84_11660) - 2331643..2332455 (-) 813 WP_014664641.1 pyruvate, water dikinase regulatory protein -
  CDO84_RS11665 (CDO84_11665) ccpN 2332481..2333119 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  CDO84_RS11670 (CDO84_11670) glyS 2333252..2335291 (-) 2040 WP_040082596.1 glycine--tRNA ligase subunit beta -
  CDO84_RS11675 (CDO84_11675) glyQ 2335284..2336171 (-) 888 WP_040083765.1 glycine--tRNA ligase subunit alpha -
  CDO84_RS11680 (CDO84_11680) recO 2336468..2337235 (-) 768 WP_014664644.1 DNA repair protein RecO Machinery gene
  CDO84_RS11685 (CDO84_11685) - 2337272..2337415 (-) 144 WP_003230053.1 YqzL family protein -
  CDO84_RS11690 (CDO84_11690) era 2337563..2338468 (-) 906 WP_014664645.1 GTPase Era -
  CDO84_RS11695 (CDO84_11695) - 2338449..2338859 (-) 411 WP_040082595.1 cytidine deaminase -
  CDO84_RS11700 (CDO84_11700) - 2338978..2339349 (-) 372 WP_040082594.1 diacylglycerol kinase family protein -
  CDO84_RS11705 (CDO84_11705) ybeY 2339330..2339803 (-) 474 WP_014664648.1 rRNA maturation RNase YbeY -
  CDO84_RS11710 (CDO84_11710) pgpH 2339804..2341939 (-) 2136 WP_082032984.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29370.06 Da        Isoelectric Point: 8.3088

>NTDB_id=234809 CDO84_RS11680 WP_014664644.1 2336468..2337235(-) (recO) [Bacillus sp. MD-5]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEERKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=234809 CDO84_RS11680 WP_014664644.1 2336468..2337235(-) (recO) [Bacillus sp. MD-5]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTTTTAATGCAAAAAACATCAGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGCGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCCTATGCTGCATATATTGCTGAATTAGTCGACAGAGGCACAGAGGAAAGAAAGCC
AAATCCTTATTTATTTGAATTTATATTAGAATCACTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACTTTTCACTTTTCTGTCCGTGATAATGGTTTTATATGCCATCGCTGTTTTGAAAAAGATCCTTATAGGATTCCGATTAA
ACCGCAAACAGCAAGGCTGTTGAGACTCTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTGTATTACGAAGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment