Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CDO84_RS10150 Genome accession   NZ_CP021911
Coordinates   2068541..2069161 (+) Length   206 a.a.
NCBI ID   WP_014664374.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2063541..2074161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS10110 (CDO84_10110) - 2064672..2065178 (-) 507 WP_040083778.1 PTS glucose transporter subunit IIA -
  CDO84_RS10115 (CDO84_10115) - 2065317..2065736 (+) 420 WP_040082804.1 Hsp20/alpha crystallin family protein -
  CDO84_RS10120 (CDO84_10120) - 2065757..2066134 (-) 378 WP_014664370.1 YppG family protein -
  CDO84_RS10125 (CDO84_10125) - 2066321..2066509 (+) 189 WP_003230690.1 YppF family protein -
  CDO84_RS10130 (CDO84_10130) - 2066549..2066920 (-) 372 WP_040082803.1 YppE family protein -
  CDO84_RS10135 (CDO84_10135) - 2066966..2067211 (-) 246 WP_040082802.1 DUF5446 family protein -
  CDO84_RS10140 (CDO84_10140) sspM 2067409..2067513 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  CDO84_RS10145 (CDO84_10145) - 2067538..2068500 (-) 963 WP_040082801.1 DUF2515 domain-containing protein -
  CDO84_RS10150 (CDO84_10150) recU 2068541..2069161 (+) 621 WP_014664374.1 Holliday junction resolvase RecU Machinery gene
  CDO84_RS10155 (CDO84_10155) - 2069183..2071924 (+) 2742 WP_040082800.1 PBP1A family penicillin-binding protein -
  CDO84_RS10160 (CDO84_10160) - 2071998..2072492 (-) 495 WP_040082798.1 YpoC family protein -
  CDO84_RS10165 (CDO84_10165) nth 2072489..2073148 (-) 660 WP_014664377.1 endonuclease III -
  CDO84_RS10170 (CDO84_10170) dnaD 2073167..2073865 (-) 699 WP_014664378.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23902.03 Da        Isoelectric Point: 9.6240

>NTDB_id=234797 CDO84_RS10150 WP_014664374.1 2068541..2069161(+) (recU) [Bacillus sp. MD-5]
MIRYPNGKTFQPKHSVSSQSSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=234797 CDO84_RS10150 WP_014664374.1 2068541..2069161(+) (recU) [Bacillus sp. MD-5]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAGCAGTCAGAAAAGGGCCCCGTC
ATACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAT
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAGCGGCTTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.029

100

0.99

Multiple sequence alignment