Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   CDO84_RS08470 Genome accession   NZ_CP021911
Coordinates   1737998..1739134 (-) Length   378 a.a.
NCBI ID   WP_040083081.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1719657..1741288 1737998..1739134 within 0


Gene organization within MGE regions


Location: 1719657..1741288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS08355 (CDO84_08355) - 1719657..1719887 (+) 231 WP_003245262.1 hypothetical protein -
  CDO84_RS08360 (CDO84_08360) nrdI 1720131..1720523 (+) 393 WP_040083097.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  CDO84_RS08365 (CDO84_08365) nrdE 1720483..1722585 (+) 2103 WP_040083095.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  CDO84_RS08370 (CDO84_08370) nrdF 1722603..1723592 (+) 990 WP_014664066.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  CDO84_RS08375 (CDO84_08375) - 1723641..1724261 (+) 621 WP_040083094.1 hypothetical protein -
  CDO84_RS08380 (CDO84_08380) cwlC 1724325..1725092 (-) 768 WP_040083093.1 sporulation-specific N-acetylmuramoyl-L-alanine amidase -
  CDO84_RS08390 (CDO84_08390) spoVK 1725715..1726683 (+) 969 WP_003231746.1 stage V sporulation protein K -
  CDO84_RS08395 (CDO84_08395) hflX 1726816..1728078 (+) 1263 WP_040083090.1 GTPase HflX -
  CDO84_RS08400 (CDO84_08400) - 1728096..1729361 (+) 1266 WP_040083088.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  CDO84_RS08405 (CDO84_08405) glnR 1729472..1729879 (+) 408 WP_014664075.1 transcriptional repressor GlnR -
  CDO84_RS08410 (CDO84_08410) glnA 1729938..1731272 (+) 1335 WP_014664076.1 type I glutamate--ammonia ligase -
  CDO84_RS08415 (CDO84_08415) - 1731357..1731502 (+) 146 Protein_1638 peptidoglycan-binding protein -
  CDO84_RS08420 (CDO84_08420) - 1731541..1731840 (-) 300 WP_040083087.1 contact-dependent growth inhibition system immunity protein -
  CDO84_RS08425 (CDO84_08425) - 1731894..1732202 (-) 309 WP_014664078.1 hypothetical protein -
  CDO84_RS08430 (CDO84_08430) - 1732223..1734094 (-) 1872 WP_088299186.1 T7SS effector LXG polymorphic toxin -
  CDO84_RS08440 (CDO84_08440) - 1734717..1734886 (+) 170 Protein_1642 phage holin family protein -
  CDO84_RS08445 (CDO84_08445) - 1734962..1735782 (+) 821 Protein_1643 N-acetylmuramoyl-L-alanine amidase -
  CDO84_RS08450 (CDO84_08450) - 1736465..1736923 (-) 459 WP_040083791.1 SMI1/KNR4 family protein -
  CDO84_RS08455 (CDO84_08455) - 1736950..1737162 (-) 213 Protein_1645 HNH/ENDO VII family nuclease -
  CDO84_RS08460 (CDO84_08460) - 1737212..1737790 (+) 579 Protein_1646 UV damage repair protein UvrX -
  CDO84_RS08465 (CDO84_08465) - 1737832..1738008 (-) 177 WP_040083082.1 hypothetical protein -
  CDO84_RS08470 (CDO84_08470) rapC 1737998..1739134 (-) 1137 WP_040083081.1 tetratricopeptide repeat protein Regulator
  CDO84_RS08475 (CDO84_08475) - 1739421..1739933 (+) 513 WP_040083079.1 GNAT family protein -
  CDO84_RS08480 (CDO84_08480) - 1740214..1740855 (+) 642 WP_040083078.1 DUF3885 domain-containing protein -
  CDO84_RS08485 (CDO84_08485) - 1741124..1741288 (+) 165 WP_003231681.1 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44757.10 Da        Isoelectric Point: 4.9303

>NTDB_id=234796 CDO84_RS08470 WP_040083081.1 1737998..1739134(-) (rapC) [Bacillus sp. MD-5]
MEQLIPSSAVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESNQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDFPEKAIPHFKDALDKAREIDMSRLIGSSLYNLGLCLFAEEAYEKAA
EYFKEGIRVYQDNGYEHSNRLLDILLMLTKTTFKMRNHSEGTSWCAHGLSLSKDLNDEIMAKMFEFIHALYVDNDKGKLN
SILNYLELKSMFSDVEDLAADAAKYYNEKEDHKVAVVYYEKVLYARKQIQRGDCLYET

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=234796 CDO84_RS08470 WP_040083081.1 1737998..1739134(-) (rapC) [Bacillus sp. MD-5]
ATGGAGCAATTAATTCCGTCATCCGCAGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGACCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAATTAATGCTGGATTACCTTGAACCAAAAACAATGAACGAAGAACGACCTGAAATTTCA
GACTTATTAGAAAAGATTGAAAGTAACCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGTGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAGATTGAACGAGCAGAATTCCACTACAAAGTTGCAGAAATTTATTATCATATGAAGCAAACTCATATGTCGATGCAT
CACATTGTTCAAGCAATTGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTCATCGG
TCTAAACTATTTGGATATGGACTTCCCTGAAAAAGCGATCCCTCATTTTAAAGATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTGTACAATCTTGGCTTATGTTTATTTGCTGAGGAAGCTTATGAAAAGGCAGCT
GAGTACTTTAAGGAGGGTATTAGAGTATACCAGGATAATGGGTATGAGCACTCAAATCGTTTATTAGACATCTTACTTAT
GTTGACAAAAACCACATTTAAAATGAGAAATCACTCCGAGGGAACTTCTTGGTGTGCACATGGTCTGTCTTTATCCAAAG
ATTTAAACGATGAGATAATGGCCAAAATGTTTGAATTCATTCATGCCCTATATGTAGATAACGACAAAGGAAAATTAAAT
TCGATTCTAAATTATTTAGAATTAAAGTCAATGTTTTCAGACGTGGAGGATTTAGCAGCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGTTTATTATGAGAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(186-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.677

100

0.487
  rapF Bacillus subtilis subsp. subtilis str. 168

45.263

100

0.455

Multiple sequence alignment