Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AAF93_RS13010 Genome accession   NZ_CP027472
Coordinates   2297568..2298197 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 2014C-3050     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2292568..2303197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF93_RS12995 helD 2292810..2294864 (-) 2055 WP_001297106.1 DNA helicase IV -
  AAF93_RS13000 yccF 2294987..2295433 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AAF93_RS13005 yccS 2295443..2297605 (+) 2163 WP_000875023.1 YccS family putative transporter -
  AAF93_RS13010 sxy/tfoX 2297568..2298197 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AAF93_RS13015 sulA 2298416..2298925 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AAF93_RS13025 ompA 2299282..2300322 (+) 1041 WP_000750416.1 porin OmpA -
  AAF93_RS13030 matP 2300397..2300849 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AAF93_RS13035 ycbZ 2301035..2302795 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=234796 AAF93_RS13010 WP_000839153.1 2297568..2298197(-) (sxy/tfoX) [Escherichia coli strain 2014C-3050]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=234796 AAF93_RS13010 WP_000839153.1 2297568..2298197(-) (sxy/tfoX) [Escherichia coli strain 2014C-3050]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment