Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CDO84_RS06865 Genome accession   NZ_CP021911
Coordinates   1365432..1365710 (+) Length   92 a.a.
NCBI ID   WP_014663823.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360432..1370710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS06845 (CDO84_06845) - 1361620..1362531 (+) 912 WP_040083260.1 ketopantoate reductase family protein -
  CDO84_RS06850 (CDO84_06850) - 1362564..1363796 (-) 1233 WP_040083259.1 aminopeptidase -
  CDO84_RS06855 (CDO84_06855) - 1363907..1364041 (-) 135 WP_003238865.1 protein YkpC -
  CDO84_RS06860 (CDO84_06860) mreBH 1364142..1365149 (-) 1008 WP_040083801.1 cell shape-determining protein MreBH -
  CDO84_RS06865 (CDO84_06865) abrB 1365432..1365710 (+) 279 WP_014663823.1 transcriptional regulator AbhA Regulator
  CDO84_RS06870 (CDO84_06870) kinC 1365901..1367187 (+) 1287 WP_040083258.1 two-component sensor histidine kinase KinC -
  CDO84_RS06875 (CDO84_06875) - 1367203..1368060 (+) 858 WP_052438163.1 gamma-glutamylcyclotransferase -
  CDO84_RS06880 (CDO84_06880) ktrC 1368092..1368757 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  CDO84_RS06885 (CDO84_06885) ade 1368912..1370645 (+) 1734 WP_040083257.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=234791 CDO84_RS06865 WP_014663823.1 1365432..1365710(+) (abrB) [Bacillus sp. MD-5]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKDYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=234791 CDO84_RS06865 WP_014663823.1 1365432..1365710(+) (abrB) [Bacillus sp. MD-5]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTTATGCCGATAGAGCTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGATTACGGCAACGGCAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment