Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   CDO84_RS06745 Genome accession   NZ_CP021911
Coordinates   1341348..1341932 (+) Length   194 a.a.
NCBI ID   WP_014663802.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1336348..1346932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS06715 (CDO84_06715) dapD 1336544..1337254 (+) 711 WP_014663797.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  CDO84_RS06720 (CDO84_06720) - 1337324..1338448 (+) 1125 WP_040083276.1 N-acetyldiaminopimelate deacetylase -
  CDO84_RS06725 (CDO84_06725) - 1338510..1338755 (+) 246 WP_003232382.1 YkuS family protein -
  CDO84_RS06730 (CDO84_06730) mscT 1338791..1339594 (-) 804 WP_040083275.1 small-conductance mechanosensitive channel protein MscT -
  CDO84_RS06735 (CDO84_06735) ahpA 1339832..1340374 (+) 543 WP_014663800.1 biofilm-specific peroxidase AhpA -
  CDO84_RS06740 (CDO84_06740) ykuV 1340441..1340899 (+) 459 WP_040083274.1 thiol-disulfide oxidoreductase YkuV -
  CDO84_RS06745 (CDO84_06745) rok 1341348..1341932 (+) 585 WP_014663802.1 transcriptional regulator Rok Regulator
  CDO84_RS06750 (CDO84_06750) cse15 1341972..1342934 (-) 963 WP_014663803.1 spore protein Cse15 -
  CDO84_RS06755 (CDO84_06755) - 1343070..1343669 (+) 600 WP_040083273.1 molybdenum cofactor guanylyltransferase -
  CDO84_RS06760 (CDO84_06760) - 1343720..1344739 (+) 1020 WP_040083272.1 molybdopterin-synthase adenylyltransferase MoeB -
  CDO84_RS06765 (CDO84_06765) glp 1344757..1346049 (+) 1293 WP_040083271.1 gephyrin-like molybdotransferase Glp -
  CDO84_RS06770 (CDO84_06770) mobB 1346010..1346531 (+) 522 WP_040083270.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22141.15 Da        Isoelectric Point: 9.7036

>NTDB_id=234790 CDO84_RS06745 WP_014663802.1 1341348..1341932(+) (rok) [Bacillus sp. MD-5]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIETAESAESANE

Nucleotide


Download         Length: 585 bp        

>NTDB_id=234790 CDO84_RS06745 WP_014663802.1 1341348..1341932(+) (rok) [Bacillus sp. MD-5]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAGCCTGACTCTCTGCCTGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTGCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCCATTAAAACATTAAAACGCCATAACGCGG
CGATTAAAAGCTCCGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCGTATCGCGGCCAGTACATTTTAGAAGGTGAAATCGAAACTGCAGA
ATCAGCCGAATCTGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

99.471

97.423

0.969

Multiple sequence alignment