Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CDO84_RS06645 Genome accession   NZ_CP021911
Coordinates   1325470..1325934 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus sp. MD-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320470..1330934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS06625 (CDO84_06625) kinA 1320935..1322755 (+) 1821 WP_014663782.1 sporulation histidine kinase KinA -
  CDO84_RS06630 (CDO84_06630) - 1322766..1323947 (-) 1182 WP_040083285.1 aminotransferase A -
  CDO84_RS06635 (CDO84_06635) - 1324149..1324310 (-) 162 WP_003245246.1 hypothetical protein -
  CDO84_RS06640 (CDO84_06640) cheV 1324515..1325426 (+) 912 WP_040083284.1 chemotaxis protein CheV -
  CDO84_RS06645 (CDO84_06645) kre 1325470..1325934 (-) 465 WP_003232406.1 YkyB family protein Regulator
  CDO84_RS06650 (CDO84_06650) - 1326059..1327351 (-) 1293 WP_040083283.1 MFS transporter -
  CDO84_RS06655 (CDO84_06655) - 1327427..1327921 (-) 495 WP_082033047.1 L,D-transpeptidase family protein -
  CDO84_RS06660 (CDO84_06660) - 1327979..1328839 (-) 861 WP_040083281.1 metallophosphoesterase -
  CDO84_RS06665 (CDO84_06665) fadH 1328983..1329747 (+) 765 WP_014663789.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=234789 CDO84_RS06645 WP_003232406.1 1325470..1325934(-) (kre) [Bacillus sp. MD-5]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=234789 CDO84_RS06645 WP_003232406.1 1325470..1325934(-) (kre) [Bacillus sp. MD-5]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGTGCTTTGCAAAAGCTCGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTGTTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CTAATCGCCAGCAGCCAGCTTATCACAAACCTGTCTTTAAAAAGCTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment