Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AAF93_RS03700 Genome accession   NZ_CP027472
Coordinates   724854..726281 (-) Length   475 a.a.
NCBI ID   WP_000980582.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3050     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 719854..731281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF93_RS03670 yeeZ 719909..720733 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  AAF93_RS03675 yeeY 720779..721708 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AAF93_RS03680 yoeI 721923..721985 (+) 63 WP_010723108.1 membrane protein YoeI -
  AAF93_RS03685 plaP 721975..723333 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AAF93_RS03690 tsuA 723512..724570 (+) 1059 WP_032276992.1 thiosulfate utilization transporter TsuA/YeeE -
  AAF93_RS03695 tsuB 724584..724811 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AAF93_RS03700 sbcB 724854..726281 (-) 1428 WP_000980582.1 exodeoxyribonuclease I Machinery gene
  AAF93_RS03705 dacD 726490..727656 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AAF93_RS03710 sbmC 727775..728248 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  AAF93_RS03715 yeeA 728446..729504 (+) 1059 WP_001200891.1 FUSC family protein -
  AAF93_RS03720 tmaR 729676..730005 (+) 330 WP_000450409.1 DUF496 family protein -
  AAF93_RS03725 - 730106..730288 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  AAF93_RS03730 - 730360..730488 (+) 129 Protein_699 transposase domain-containing protein -
  AAF93_RS31655 - 730777..730869 (-) 93 Protein_700 DUF957 domain-containing protein -
  AAF93_RS03740 yeeW 730903..731097 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6086

>NTDB_id=234783 AAF93_RS03700 WP_000980582.1 724854..726281(-) (sbcB) [Escherichia coli strain 2014C-3050]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=234783 AAF93_RS03700 WP_000980582.1 724854..726281(-) (sbcB) [Escherichia coli strain 2014C-3050]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581