Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   CDO84_RS05185 Genome accession   NZ_CP021911
Coordinates   1058100..1059053 (+) Length   317 a.a.
NCBI ID   WP_040083460.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1053100..1064053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS05160 (CDO84_05160) argF 1054931..1055890 (+) 960 WP_040083464.1 ornithine carbamoyltransferase -
  CDO84_RS05165 (CDO84_05165) - 1055976..1056155 (+) 180 WP_003245356.1 YjzC family protein -
  CDO84_RS05170 (CDO84_05170) - 1056201..1056386 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  CDO84_RS05175 (CDO84_05175) - 1056637..1057371 (+) 735 WP_040083462.1 hypothetical protein -
  CDO84_RS05180 (CDO84_05180) - 1057453..1058010 (+) 558 WP_040083461.1 hypothetical protein -
  CDO84_RS05185 (CDO84_05185) med 1058100..1059053 (+) 954 WP_040083460.1 transcriptional regulator Med Regulator
  CDO84_RS05190 (CDO84_05190) comZ 1059068..1059259 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  CDO84_RS05195 (CDO84_05195) - 1059289..1059516 (-) 228 WP_080478200.1 hypothetical protein -
  CDO84_RS05200 (CDO84_05200) fabH 1059681..1060619 (+) 939 WP_014663519.1 beta-ketoacyl-ACP synthase III -
  CDO84_RS05205 (CDO84_05205) fabF 1060642..1061883 (+) 1242 WP_040083457.1 beta-ketoacyl-ACP synthase II -
  CDO84_RS05210 (CDO84_05210) - 1061958..1062743 (+) 786 WP_040083456.1 DUF2268 domain-containing protein -
  CDO84_RS05215 (CDO84_05215) appD 1062935..1063921 (+) 987 WP_040083455.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35312.77 Da        Isoelectric Point: 4.4672

>NTDB_id=234780 CDO84_RS05185 WP_040083460.1 1058100..1059053(+) (med) [Bacillus sp. MD-5]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLDTGVVEMGTFSPLVDEDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=234780 CDO84_RS05185 WP_040083460.1 1058100..1059053(+) (med) [Bacillus sp. MD-5]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGACAATGTGACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTCATTGCTTCCTTTACTTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGAGCCAAGTATGAAAATCCAGATATAGAAGTAAACACGAAATATACGGACCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCTGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGGCTTTATGCCATCGGCTACGTTACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCTTATGAAATCATTGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTTGATACGGGAGTAGTCGAGATGGGAACATTCAGCCCGCTCGTCGATG
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994

Multiple sequence alignment