Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CDO84_RS03675 Genome accession   NZ_CP021911
Coordinates   780010..780801 (+) Length   263 a.a.
NCBI ID   WP_040083678.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 775010..785801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS03645 (CDO84_03645) - 775850..776881 (+) 1032 WP_040083681.1 iron ABC transporter permease -
  CDO84_RS03650 (CDO84_03650) - 776996..777877 (+) 882 WP_040083680.1 PhzF family phenazine biosynthesis isomerase -
  CDO84_RS03655 (CDO84_03655) - 777965..778549 (+) 585 WP_014663261.1 nitroreductase -
  CDO84_RS03660 (CDO84_03660) - 778587..778778 (-) 192 WP_014663262.1 YfhD family protein -
  CDO84_RS03665 (CDO84_03665) - 778845..778955 (-) 111 WP_003223230.1 YfhE family protein -
  CDO84_RS03670 (CDO84_03670) - 779010..779921 (-) 912 WP_040083679.1 TIGR01777 family oxidoreductase -
  CDO84_RS03675 (CDO84_03675) recX 780010..780801 (+) 792 WP_040083678.1 recombination regulator RecX Regulator
  CDO84_RS03680 (CDO84_03680) - 780810..781124 (+) 315 WP_014476208.1 YfhH family protein -
  CDO84_RS03685 (CDO84_03685) - 781269..782462 (+) 1194 WP_014663266.1 MFS transporter -
  CDO84_RS03690 (CDO84_03690) - 782494..782646 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  CDO84_RS03695 (CDO84_03695) - 782771..783040 (+) 270 WP_014663267.1 YfhJ family protein -
  CDO84_RS03700 (CDO84_03700) - 783158..783676 (+) 519 WP_040083674.1 SH3 domain-containing protein -
  CDO84_RS03705 (CDO84_03705) - 783760..784092 (+) 333 WP_040083673.1 SdpI family protein -
  CDO84_RS03710 (CDO84_03710) ephM 784079..784939 (+) 861 WP_040083671.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30845.08 Da        Isoelectric Point: 6.7763

>NTDB_id=234772 CDO84_RS03675 WP_040083678.1 780010..780801(+) (recX) [Bacillus sp. MD-5]
MPFITKISAQKKNTERFNIFLDDKYAFSVDADVLVKYELKKGKELDDLDIIEIQYGDEVKKGFNRALEFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHKLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQMQLQRKGFSFDVISAALEQIEYENDEDTEKEALRIHAEKALRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLHEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=234772 CDO84_RS03675 WP_040083678.1 780010..780801(+) (recX) [Bacillus sp. MD-5]
ATGCCGTTTATTACAAAAATATCAGCGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATATGAGCTCAAGAAGGGAAAAGAACTTGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGCGCGCTTGAATTTTTATCCTATCGAATGCGGTCAACGAAAGAGGTC
GAGGACCACTTGAAGAAAAAAGAAACCTCGCCCCCCGTTATTGCGGAGGTCATCCATAAGCTCAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACCCACAAAAAAACAAACGGAAAAGGACCTGATGTTTTGTTCAGAG
AGCTGAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCTTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACAAAAGAACTCAAACAGCGCGCCCAGATGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTCATCAGTGCGGCGCTAGAGCAGATTGAGTATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCATTCACGCGGAAAAAGCGCTTAGAAAATACCGCTATGACGGCTCCTATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAACAATTTCTGCACGAAGAGGAGTAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

95.817

100

0.958

Multiple sequence alignment