Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CD007_RS13975 Genome accession   NZ_CP021903
Coordinates   2695849..2696595 (-) Length   248 a.a.
NCBI ID   WP_080332541.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2690849..2701595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS13950 (CD007_13950) mreC 2691254..2692126 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  CD007_RS13955 (CD007_13955) mreB 2692157..2693170 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  CD007_RS13960 (CD007_13960) radC 2693262..2693957 (-) 696 WP_041850180.1 DNA repair protein RadC -
  CD007_RS13965 (CD007_13965) maf 2693994..2694563 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  CD007_RS13970 (CD007_13970) spoIIB 2694717..2695715 (-) 999 WP_041850181.1 stage II sporulation protein SpoIIB -
  CD007_RS13975 (CD007_13975) comC 2695849..2696595 (-) 747 WP_080332541.1 A24 family peptidase Machinery gene
  CD007_RS13980 (CD007_13980) folC 2696735..2698027 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  CD007_RS13985 (CD007_13985) valS 2698087..2700729 (-) 2643 WP_041850183.1 valine--tRNA ligase -
  CD007_RS13990 (CD007_13990) - 2701177..2701368 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26437.01 Da        Isoelectric Point: 9.7944

>NTDB_id=234631 CD007_RS13975 WP_080332541.1 2695849..2696595(-) (comC) [Bacillus subtilis strain ge28]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDTWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=234631 CD007_RS13975 WP_080332541.1 2695849..2696595(-) (comC) [Bacillus subtilis strain ge28]
ATGCTATCCATTCTTTTTATCTTCGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATACCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment