Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CD007_RS12455 Genome accession   NZ_CP021903
Coordinates   2432642..2433409 (-) Length   255 a.a.
NCBI ID   WP_041850024.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2427642..2438409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS12435 (CD007_12435) ppsR 2427817..2428629 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  CD007_RS12440 (CD007_12440) ccpN 2428655..2429293 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  CD007_RS12445 (CD007_12445) glyS 2429426..2431465 (-) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  CD007_RS12450 (CD007_12450) glyQ 2431458..2432345 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  CD007_RS12455 (CD007_12455) recO 2432642..2433409 (-) 768 WP_041850024.1 DNA repair protein RecO Machinery gene
  CD007_RS12460 (CD007_12460) yqzL 2433446..2433589 (-) 144 WP_003230053.1 YqzL family protein -
  CD007_RS12465 (CD007_12465) era 2433737..2434642 (-) 906 WP_003230051.1 GTPase Era -
  CD007_RS12470 (CD007_12470) - 2434623..2435033 (-) 411 WP_003230049.1 cytidine deaminase -
  CD007_RS12475 (CD007_12475) unpK 2435152..2435523 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  CD007_RS12480 (CD007_12480) ybeY 2435504..2435977 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  CD007_RS12485 (CD007_12485) pgpH 2435978..2438113 (-) 2136 WP_015251683.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29376.06 Da        Isoelectric Point: 8.3080

>NTDB_id=234623 CD007_RS12455 WP_041850024.1 2432642..2433409(-) (recO) [Bacillus subtilis strain ge28]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHFMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=234623 CD007_RS12455 WP_041850024.1 2432642..2433409(-) (recO) [Bacillus subtilis strain ge28]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTAGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTAAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATCAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATTTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment