Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | CD007_RS12170 | Genome accession | NZ_CP021903 |
| Coordinates | 2382710..2383747 (-) | Length | 345 a.a. |
| NCBI ID | WP_041850016.1 | Uniprot ID | - |
| Organism | Bacillus subtilis strain ge28 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2377710..2388747
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CD007_RS12120 (CD007_12120) | tasA | 2377808..2378593 (-) | 786 | WP_015251717.1 | biofilm matrix protein TasA | - |
| CD007_RS12125 (CD007_12125) | sipW | 2378657..2379229 (-) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| CD007_RS12130 (CD007_12130) | tapA | 2379213..2379974 (-) | 762 | WP_015251716.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CD007_RS12135 (CD007_12135) | yqzG | 2380246..2380572 (+) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| CD007_RS12140 (CD007_12140) | spoIITA | 2380614..2380793 (-) | 180 | WP_003230176.1 | YqzE family protein | - |
| CD007_RS12145 (CD007_12145) | comGG | 2380864..2381238 (-) | 375 | WP_015251714.1 | ComG operon protein ComGG | Machinery gene |
| CD007_RS12150 (CD007_12150) | comGF | 2381239..2381622 (-) | 384 | WP_041850015.1 | ComG operon protein ComGF | Machinery gene |
| CD007_RS12155 (CD007_12155) | comGE | 2381648..2381995 (-) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| CD007_RS12160 (CD007_12160) | comGD | 2381979..2382410 (-) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| CD007_RS12165 (CD007_12165) | comGC | 2382400..2382696 (-) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| CD007_RS12170 (CD007_12170) | comGB | 2382710..2383747 (-) | 1038 | WP_041850016.1 | comG operon protein ComGB | Machinery gene |
| CD007_RS12175 (CD007_12175) | comGA | 2383734..2384804 (-) | 1071 | WP_004399124.1 | competence protein ComGA | Machinery gene |
| CD007_RS12185 (CD007_12185) | corA | 2385215..2386168 (-) | 954 | WP_029317911.1 | magnesium transporter CorA | - |
| CD007_RS12190 (CD007_12190) | yqhB | 2386311..2387639 (+) | 1329 | WP_041850018.1 | hemolysin family protein | - |
| CD007_RS12195 (CD007_12195) | rsbRD | 2387692..2388528 (-) | 837 | WP_041850019.1 | RsbT co-antagonist protein RsbRD | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39728.18 Da Isoelectric Point: 9.6257
>NTDB_id=234621 CD007_RS12170 WP_041850016.1 2382710..2383747(-) (comGB) [Bacillus subtilis strain ge28]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAALILLVYLSMLVPMYQMMNQM
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAALILLVYLSMLVPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=234621 CD007_RS12170 WP_041850016.1 2382710..2383747(-) (comGB) [Bacillus subtilis strain ge28]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATTCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGCTGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATTCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGCTGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
99.381 |
93.623 |
0.93 |