Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CD007_RS11920 Genome accession   NZ_CP021903
Coordinates   2342751..2343554 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2337751..2348554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS11900 (CD007_11900) glpQB 2338897..2339628 (-) 732 WP_041850009.1 glycerophosphodiester phosphodiesterase -
  CD007_RS11905 (CD007_11905) yqiI 2339707..2340327 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  CD007_RS11910 (CD007_11910) yqiH 2340342..2340635 (-) 294 WP_003230284.1 lipoprotein -
  CD007_RS21060 - 2340943..2341095 (+) 153 WP_014480226.1 hypothetical protein -
  CD007_RS11915 (CD007_11915) yqiG 2341168..2342286 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  CD007_RS11920 (CD007_11920) spo0A 2342751..2343554 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  CD007_RS11925 (CD007_11925) spoIVB 2343830..2345110 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  CD007_RS11930 (CD007_11930) recN 2345285..2347015 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  CD007_RS11935 (CD007_11935) argR 2347052..2347501 (-) 450 WP_003230265.1 arginine repressor ArgR -
  CD007_RS11940 (CD007_11940) yqxC 2347599..2348444 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=234612 CD007_RS11920 WP_003226427.1 2342751..2343554(-) (spo0A) [Bacillus subtilis strain ge28]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=234612 CD007_RS11920 WP_003226427.1 2342751..2343554(-) (spo0A) [Bacillus subtilis strain ge28]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment