Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CD007_RS10945 Genome accession   NZ_CP021903
Coordinates   2166855..2167475 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161855..2172475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS10905 (CD007_10905) ptsA 2162986..2163492 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  CD007_RS10910 (CD007_10910) ypqA 2163630..2164049 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  CD007_RS10915 (CD007_10915) sppG 2164070..2164447 (-) 378 WP_004398696.1 YppG family protein -
  CD007_RS10920 (CD007_10920) yppF 2164635..2164823 (+) 189 WP_003230690.1 YppF family protein -
  CD007_RS10925 (CD007_10925) yppE 2164862..2165233 (-) 372 WP_021481525.1 YppE family protein -
  CD007_RS10930 (CD007_10930) yppD 2165279..2165524 (-) 246 WP_041849959.1 DUF5446 family protein -
  CD007_RS10935 (CD007_10935) sspM 2165723..2165827 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  CD007_RS10940 (CD007_10940) yppC 2165852..2166814 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  CD007_RS10945 (CD007_10945) recU 2166855..2167475 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  CD007_RS10950 (CD007_10950) ponA 2167497..2170247 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  CD007_RS10955 (CD007_10955) ypoC 2170322..2170816 (-) 495 WP_041849962.1 YpoC family protein -
  CD007_RS10960 (CD007_10960) nth 2170813..2171472 (-) 660 WP_009967580.1 endonuclease III -
  CD007_RS10965 (CD007_10965) dnaD 2171491..2172189 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=234611 CD007_RS10945 WP_004399067.1 2166855..2167475(+) (recU) [Bacillus subtilis strain ge28]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=234611 CD007_RS10945 WP_004399067.1 2166855..2167475(+) (recU) [Bacillus subtilis strain ge28]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment