Detailed information NTG0234610

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: CD007_RS10160
• Genome accession: NZ_CP021903
• Coordinates: 2035563..2036693 (+)
• Length: 376 a.a.
• NCBI ID: WP_021481447.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain ge28
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	2034198..2038593	2035563..2036693	within	0

Gene organization within MGE regions

Location: 2034198..2038593

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CD007_RS10150 (CD007_10150)	-	2034198..2034572 (+)	375	WP_021481445.1	YoqO family protein	-
CD007_RS21510 (CD007_10155)	-	2035284..2035430 (+)	147	Protein_1944	phage holin	-
CD007_RS10160 (CD007_10160)	rapC	2035563..2036693 (+)	1131	WP_021481447.1	tetratricopeptide repeat protein	Regulator
CD007_RS21030	-	2036683..2036826 (+)	144	WP_153801665.1	hypothetical protein	-
CD007_RS21350 (CD007_10165)	-	2036980..2037180 (-)	201	WP_021481449.1	hypothetical protein	-
CD007_RS21355	-	2037402..2037776 (-)	375	Protein_1948	UV damage repair protein UvrX	-
CD007_RS10175 (CD007_10175)	-	2037774..2037929 (-)	156	Protein_1949	T7SS effector LXG polymorphic toxin	-
CD007_RS10180 (CD007_10180)	yobM	2038030..2038587 (-)	558	WP_038829958.1	SMI1/KNR4 family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44393.16 Da
• Isoelectric Point: 5.8915

>NTDB_id=234610 CD007_RS10160 WP_021481447.1 2035563..2036693(+) (rapC) [Bacillus subtilis strain ge28]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide

• Length: 1131 bp

>NTDB_id=234610 CD007_RS10160 WP_021481447.1 2035563..2036693(+) (rapC) [Bacillus subtilis strain ge28]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (221-287)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	51.064	100	0.511
rapF	Bacillus subtilis subsp. subtilis str. 168	45.119	100	0.455