Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   CD007_RS05555 Genome accession   NZ_CP021903
Coordinates   1073492..1074070 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068492..1079070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS05535 (CD007_05535) hemAT 1069003..1070301 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  CD007_RS05540 (CD007_05540) comW 1070440..1071969 (-) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  CD007_RS05545 (CD007_05545) yhxC 1072081..1072938 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  CD007_RS05550 (CD007_05550) yhzC 1072966..1073199 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  CD007_RS05555 (CD007_05555) comK 1073492..1074070 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  CD007_RS05560 (CD007_05560) yhxD 1074117..1075016 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  CD007_RS05565 (CD007_05565) yhjA 1075233..1075502 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  CD007_RS05570 (CD007_05570) yhjB 1075546..1077015 (-) 1470 WP_029317574.1 sodium:solute symporter -
  CD007_RS05575 (CD007_05575) yhjC 1077012..1077212 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  CD007_RS05580 (CD007_05580) - 1077411..1077782 (-) 372 WP_014476361.1 hypothetical protein -
  CD007_RS05585 (CD007_05585) yhjE 1077934..1078557 (+) 624 WP_010886465.1 VTT domain-containing protein -
  CD007_RS05590 (CD007_05590) lepB 1078559..1079065 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=234591 CD007_RS05555 WP_029317573.1 1073492..1074070(+) (comK) [Bacillus subtilis strain ge28]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=234591 CD007_RS05555 WP_029317573.1 1073492..1074070(+) (comK) [Bacillus subtilis strain ge28]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment