Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   CD007_RS04485 Genome accession   NZ_CP021903
Coordinates   883157..883951 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain ge28     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 878157..888951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD007_RS04455 (CD007_04455) sxzA 878996..880027 (+) 1032 WP_003233568.1 iron ABC transporter permease -
  CD007_RS04460 (CD007_04460) yfhB 880142..881023 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  CD007_RS04465 (CD007_04465) yfhC 881111..881695 (+) 585 WP_003243940.1 nitroreductase -
  CD007_RS04470 (CD007_04470) yfhD 881734..881925 (-) 192 WP_003233561.1 YfhD family protein -
  CD007_RS04475 (CD007_04475) yfhE 881992..882102 (-) 111 WP_003223230.1 YfhE family protein -
  CD007_RS04480 (CD007_04480) yfhF 882157..883068 (-) 912 WP_029726845.1 TIGR01777 family oxidoreductase -
  CD007_RS04485 (CD007_04485) recX 883157..883951 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  CD007_RS04490 (CD007_04490) yfhH 883953..884273 (+) 321 WP_029726843.1 YfhH family protein -
  CD007_RS04495 (CD007_04495) yfhI 884410..885603 (+) 1194 WP_072692836.1 MFS transporter -
  CD007_RS04500 (CD007_04500) sspK 885635..885787 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  CD007_RS04505 (CD007_04505) yfhJ 885912..886181 (+) 270 WP_003243789.1 YfhJ family protein -
  CD007_RS04510 (CD007_04510) yfhK 886326..886844 (+) 519 WP_029726841.1 SH3 domain-containing protein -
  CD007_RS04515 (CD007_04515) spdL 886929..887246 (+) 318 WP_032679045.1 SdpC immunity protein SpdL -
  CD007_RS04520 (CD007_04520) ephM 887248..888108 (+) 861 WP_029726839.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=234586 CD007_RS04485 WP_029726844.1 883157..883951(+) (recX) [Bacillus subtilis strain ge28]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=234586 CD007_RS04485 WP_029726844.1 883157..883951(+) (recX) [Bacillus subtilis strain ge28]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAAATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996

Multiple sequence alignment