Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6W76_RS04315 Genome accession   NZ_CP027459
Coordinates   822169..823596 (-) Length   475 a.a.
NCBI ID   WP_000980611.1    Uniprot ID   -
Organism   Escherichia coli strain 90-3040     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 817169..828596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W76_RS04285 yeeZ 817224..818048 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  C6W76_RS04290 yeeY 818094..819023 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  C6W76_RS04295 yoeI 819238..819300 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6W76_RS04300 plaP 819290..820648 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6W76_RS04305 tsuA 820827..821885 (+) 1059 WP_032206762.1 thiosulfate utilization transporter TsuA/YeeE -
  C6W76_RS04310 tsuB 821899..822126 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  C6W76_RS04315 sbcB 822169..823596 (-) 1428 WP_000980611.1 exodeoxyribonuclease I Machinery gene
  C6W76_RS04320 dacD 823805..824971 (+) 1167 WP_032206763.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6W76_RS04325 sbmC 825102..825563 (+) 462 WP_244469400.1 DNA gyrase inhibitor SbmC -
  C6W76_RS04330 yeeA 825761..826819 (+) 1059 WP_021570850.1 FUSC family protein -
  C6W76_RS04335 tmaR 826991..827320 (+) 330 WP_000450409.1 DUF496 family protein -
  C6W76_RS04340 - 827421..827864 (-) 444 WP_032206764.1 EutP/PduV family microcompartment system protein -
  C6W76_RS04345 pduU 827869..828219 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=234542 C6W76_RS04315 WP_000980611.1 822169..823596(-) (sbcB) [Escherichia coli strain 90-3040]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPTDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=234542 C6W76_RS04315 WP_000980611.1 822169..823596(-) (sbcB) [Escherichia coli strain 90-3040]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTACAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACGCCAGAGTTTTTGCAGGGTTATGCAGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585

Multiple sequence alignment