Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   S100333_RS11630 Genome accession   NZ_CP021892
Coordinates   2183450..2184070 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2178450..2189070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS11590 (S100333_02373) ptsA 2179582..2180088 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  S100333_RS11595 (S100333_02374) ypqA 2180226..2180645 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  S100333_RS11600 (S100333_02375) sppG 2180666..2181043 (-) 378 WP_004398696.1 YppG family protein -
  S100333_RS11605 (S100333_02376) yppF 2181230..2181418 (+) 189 WP_003230690.1 YppF family protein -
  S100333_RS11610 (S100333_02377) yppE 2181457..2181828 (-) 372 WP_003246080.1 YppE family protein -
  S100333_RS11615 (S100333_02378) yppD 2181874..2182119 (-) 246 WP_021481526.1 DUF5446 family protein -
  S100333_RS11620 (S100333_02379) sspM 2182318..2182422 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  S100333_RS11625 (S100333_02380) yppC 2182447..2183409 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  S100333_RS11630 (S100333_02381) recU 2183450..2184070 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  S100333_RS11635 (S100333_02382) ponA 2184092..2186836 (+) 2745 WP_046160510.1 PBP1A family penicillin-binding protein -
  S100333_RS11640 (S100333_02383) ypoC 2186912..2187406 (-) 495 WP_009967579.1 YpoC family protein -
  S100333_RS11645 (S100333_02384) nth 2187403..2188062 (-) 660 WP_009967580.1 endonuclease III -
  S100333_RS11650 (S100333_02385) dnaD 2188081..2188779 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=234530 S100333_RS11630 WP_014480105.1 2183450..2184070(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=234530 S100333_RS11630 WP_014480105.1 2183450..2184070(+) (recU) [Bacillus subtilis subsp. subtilis strain SRCM100333]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment