Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   S100333_RS07825 Genome accession   NZ_CP021892
Coordinates   1493372..1493836 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain SRCM100333     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488372..1498836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S100333_RS07805 (S100333_01602) kinA 1488840..1490672 (+) 1833 WP_069964148.1 sporulation histidine kinase KinA -
  S100333_RS07810 (S100333_01603) dapX 1490669..1491850 (-) 1182 WP_082090376.1 aminotransferase A -
  S100333_RS07815 (S100333_01604) - 1492052..1492213 (-) 162 WP_003245246.1 hypothetical protein -
  S100333_RS07820 (S100333_01605) cheV 1492417..1493328 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  S100333_RS07825 (S100333_01606) kre 1493372..1493836 (-) 465 WP_003232406.1 YkyB family protein Regulator
  S100333_RS07830 (S100333_01607) ykuC 1493962..1495254 (-) 1293 WP_015252195.1 MFS transporter -
  S100333_RS07835 (S100333_01608) ltdD 1495330..1495824 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  S100333_RS07840 (S100333_01609) ppeE 1495881..1496741 (-) 861 WP_003232400.1 metallophosphoesterase -
  S100333_RS07845 (S100333_01610) fadH 1496884..1497648 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=234523 S100333_RS07825 WP_003232406.1 1493372..1493836(-) (kre) [Bacillus subtilis subsp. subtilis strain SRCM100333]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=234523 S100333_RS07825 WP_003232406.1 1493372..1493836(-) (kre) [Bacillus subtilis subsp. subtilis strain SRCM100333]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment