Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6W79_RS15135 Genome accession   NZ_CP027457
Coordinates   3033843..3034358 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 88-3493     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028843..3039358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W79_RS15090 csrA 3029697..3029882 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  C6W79_RS15120 yqaB 3031073..3031639 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6W79_RS15125 yqaA 3031636..3032064 (+) 429 WP_001287454.1 YqaA family protein -
  C6W79_RS15130 gshA 3032137..3033693 (+) 1557 WP_001613656.1 glutamate--cysteine ligase -
  C6W79_RS15135 luxS 3033843..3034358 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6W79_RS15140 - 3034407..3035519 (-) 1113 Protein_2778 AAA family ATPase -
  C6W79_RS15145 - 3035516..3036223 (-) 708 WP_001613653.1 RNA ligase family protein -
  C6W79_RS15150 emrB 3036481..3038019 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6W79_RS15155 emrA 3038036..3039208 (-) 1173 WP_001613652.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=234510 C6W79_RS15135 WP_001130211.1 3033843..3034358(+) (luxS) [Escherichia coli strain 88-3493]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=234510 C6W79_RS15135 WP_001130211.1 3033843..3034358(+) (luxS) [Escherichia coli strain 88-3493]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731