Detailed information NTG0234443

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C6W74_RS25300
• Genome accession: NZ_CP027454
• Coordinates: 4766297..4767289 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2014C-4423
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4761297..4772289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6W74_RS25275	ygbN	4761981..4763345 (+)	1365	WP_000104444.1	GntP family transporter	-
C6W74_RS25280	-	4763355..4763591 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
C6W74_RS25285	-	4763602..4765029 (-)	1428	WP_000863215.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
C6W74_RS25290	-	4765029..4765622 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
C6W74_RS25295	-	4765769..4766176 (+)	408	WP_001208060.1	MarR family transcriptional regulator	-
C6W74_RS25300	rpoS	4766297..4767289 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
C6W74_RS25305	nlpD	4767352..4768446 (-)	1095	WP_306307908.1	murein hydrolase activator NlpD	-
C6W74_RS25310	pcm	4768631..4769257 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
C6W74_RS25315	surE	4769251..4770012 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
C6W74_RS25320	truD	4769993..4771042 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
C6W74_RS25325	ispF	4771039..4771518 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C6W74_RS25330	ispD	4771518..4772228 (-)	711	WP_000246142.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=234443 C6W74_RS25300 WP_000081550.1 4766297..4767289(-) (rpoS) [Escherichia coli strain 2014C-4423]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=234443 C6W74_RS25300 WP_000081550.1 4766297..4767289(-) (rpoS) [Escherichia coli strain 2014C-4423]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715