Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C6W74_RS25000 Genome accession   NZ_CP027454
Coordinates   4709501..4710016 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2014C-4423     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4704501..4715016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W74_RS24975 ygaZ 4704900..4705637 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  C6W74_RS24980 ygaH 4705627..4705962 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  C6W74_RS24985 emrR 4706053..4706583 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  C6W74_RS24990 emrA 4706710..4707882 (+) 1173 WP_001370257.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  C6W74_RS24995 emrB 4707899..4709437 (+) 1539 WP_001370184.1 multidrug efflux MFS transporter permease subunit EmrB -
  C6W74_RS25000 luxS 4709501..4710016 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C6W74_RS25005 gshA 4710166..4711722 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  C6W74_RS25010 yqaA 4711795..4712223 (-) 429 WP_001287454.1 YqaA family protein -
  C6W74_RS25015 yqaB 4712220..4712786 (-) 567 WP_000273301.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C6W74_RS25040 csrA 4714104..4714289 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=234440 C6W74_RS25000 WP_001130211.1 4709501..4710016(-) (luxS) [Escherichia coli strain 2014C-4423]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=234440 C6W74_RS25000 WP_001130211.1 4709501..4710016(-) (luxS) [Escherichia coli strain 2014C-4423]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731