Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C6W74_RS12640 Genome accession   NZ_CP027454
Coordinates   2485198..2485827 (+) Length   209 a.a.
NCBI ID   WP_000841914.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-4423     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2480198..2490827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W74_RS12615 ycbZ 2480588..2482348 (-) 1761 WP_000156526.1 Lon protease family protein -
  C6W74_RS12620 matP 2482534..2482986 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  C6W74_RS12625 ompA 2483061..2484113 (-) 1053 WP_000750419.1 porin OmpA -
  C6W74_RS12635 sulA 2484470..2484979 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C6W74_RS12640 sxy/tfoX 2485198..2485827 (+) 630 WP_000841914.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C6W74_RS12645 yccS 2485790..2487952 (-) 2163 WP_000875061.1 YccS family putative transporter -
  C6W74_RS12650 yccF 2487962..2488408 (-) 447 WP_001261235.1 YccF domain-containing protein -
  C6W74_RS12655 helD 2488531..2490585 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24130.97 Da        Isoelectric Point: 9.2180

>NTDB_id=234418 C6W74_RS12640 WP_000841914.1 2485198..2485827(+) (sxy/tfoX) [Escherichia coli strain 2014C-4423]
MKSPSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=234418 C6W74_RS12640 WP_000841914.1 2485198..2485827(+) (sxy/tfoX) [Escherichia coli strain 2014C-4423]
ATGAAAAGCCCCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995