Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CDV25_RS06045 Genome accession   NZ_CP021886
Coordinates   1228469..1228864 (-) Length   131 a.a.
NCBI ID   WP_108911185.1    Uniprot ID   A0A2U8FDN8
Organism   Helicobacter apodemus strain SCJK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1223469..1233864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDV25_RS06025 (CDV25_06000) - 1224076..1225206 (-) 1131 WP_108911181.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  CDV25_RS06030 (CDV25_06005) - 1225216..1225974 (-) 759 WP_204161881.1 NAD+ synthase -
  CDV25_RS06035 (CDV25_06010) - 1226136..1227062 (+) 927 WP_108911183.1 OmpA family protein -
  CDV25_RS06040 (CDV25_06015) - 1227089..1228486 (+) 1398 WP_108911184.1 chemotaxis protein CheX -
  CDV25_RS06045 (CDV25_06020) dprB 1228469..1228864 (-) 396 WP_108911185.1 Holliday junction resolvase RuvX Machinery gene
  CDV25_RS06050 (CDV25_06025) - 1228861..1229625 (-) 765 WP_034552989.1 DNA-processing protein DprA -
  CDV25_RS06055 (CDV25_06030) - 1229622..1231757 (-) 2136 WP_108911186.1 hypothetical protein -
  CDV25_RS10595 - 1231820..1232887 (-) 1068 WP_239056325.1 divergent polysaccharide deacetylase family protein -
  CDV25_RS06065 (CDV25_06040) minE 1232877..1233110 (-) 234 WP_034552979.1 cell division topological specificity factor MinE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14815.55 Da        Isoelectric Point: 9.8253

>NTDB_id=234411 CDV25_RS06045 WP_108911185.1 1228469..1228864(-) (dprB) [Helicobacter apodemus strain SCJK1]
MKNILAIDVGLKRIGLAKYVQNIPLPIAPILRKNRHQAAKALQDFVISNKIDILVVGIPKESNSDMEMRIKHFIGLLNLP
QEIEICFIDESFSSVEALEKARESKRFKSKDGKLDSLAALMILERYLIGKE

Nucleotide


Download         Length: 396 bp        

>NTDB_id=234411 CDV25_RS06045 WP_108911185.1 1228469..1228864(-) (dprB) [Helicobacter apodemus strain SCJK1]
ATGAAAAATATTTTAGCTATTGATGTAGGACTTAAACGCATAGGTTTAGCAAAATATGTGCAAAATATCCCTTTACCCAT
TGCTCCAATTTTAAGAAAAAATCGGCATCAAGCTGCAAAAGCTTTACAAGATTTTGTGATAAGCAATAAGATTGATATTC
TTGTGGTTGGGATTCCCAAAGAGAGCAATTCTGATATGGAAATGAGAATCAAACATTTTATAGGATTATTAAATCTCCCA
CAAGAAATTGAAATTTGCTTTATAGACGAATCTTTTAGTTCAGTAGAAGCATTAGAGAAAGCAAGAGAAAGCAAGAGATT
TAAAAGCAAAGATGGGAAGTTAGATAGCCTTGCTGCCCTGATGATTTTAGAACGTTATTTAATAGGTAAGGAATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(3-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FDN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

49.606

96.947

0.481

Multiple sequence alignment