Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C6W71_RS19825 Genome accession   NZ_CP027452
Coordinates   3900368..3901795 (-) Length   475 a.a.
NCBI ID   WP_072130353.1    Uniprot ID   -
Organism   Escherichia coli strain 2014C-3338     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3895368..3906795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6W71_RS19790 hisL 3895952..3896002 (-) 51 WP_001364200.1 his operon leader peptide -
  C6W71_RS19795 yefM 3896285..3896536 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  C6W71_RS19800 yoeB 3896533..3896787 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  C6W71_RS19805 yeeZ 3896870..3897694 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  C6W71_RS19810 yeeY 3897740..3898669 (+) 930 WP_052920435.1 LysR substrate-binding domain-containing protein -
  C6W71_RS19815 yoeI 3898884..3898946 (+) 63 WP_010723108.1 membrane protein YoeI -
  C6W71_RS19820 plaP 3898936..3900294 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  C6W71_RS19825 sbcB 3900368..3901795 (-) 1428 WP_072130353.1 exodeoxyribonuclease I Machinery gene
  C6W71_RS19830 dacD 3902004..3903170 (+) 1167 WP_024240316.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  C6W71_RS19835 sbmC 3903289..3903762 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  C6W71_RS19840 yeeA 3903960..3905018 (+) 1059 WP_001200890.1 FUSC family protein -
  C6W71_RS19845 tmaR 3905190..3905519 (+) 330 WP_000450409.1 DUF496 family protein -
  C6W71_RS19850 - 3905619..3906062 (-) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  C6W71_RS19855 pduU 3906067..3906417 (-) 351 WP_052920433.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54383.66 Da        Isoelectric Point: 5.3476

>NTDB_id=234364 C6W71_RS19825 WP_072130353.1 3900368..3901795(-) (sbcB) [Escherichia coli strain 2014C-3338]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSLVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=234364 C6W71_RS19825 WP_072130353.1 3900368..3901795(-) (sbcB) [Escherichia coli strain 2014C-3338]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTTGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581