Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CC204_RS12815 Genome accession   NZ_CP021874
Coordinates   2603047..2604417 (+) Length   456 a.a.
NCBI ID   WP_088270525.1    Uniprot ID   -
Organism   Enterococcus wangshanyuanii strain MN05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2598047..2609417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC204_RS12795 - 2598371..2599558 (-) 1188 WP_088270521.1 3-phosphoglycerate dehydrogenase family protein -
  CC204_RS12800 serC 2599559..2600650 (-) 1092 WP_088270522.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  CC204_RS12805 - 2600948..2602324 (+) 1377 WP_088270523.1 hypothetical protein -
  CC204_RS12810 - 2602445..2602924 (+) 480 WP_088270524.1 dUTP diphosphatase -
  CC204_RS12815 radA 2603047..2604417 (+) 1371 WP_088270525.1 DNA repair protein RadA Machinery gene
  CC204_RS12820 - 2604500..2605642 (+) 1143 WP_088270526.1 PIN/TRAM domain-containing protein -
  CC204_RS12825 ispD 2605629..2606354 (+) 726 WP_088270527.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  CC204_RS12830 ispF 2606364..2606837 (+) 474 WP_088270528.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  CC204_RS12835 gltX 2606853..2608310 (+) 1458 WP_088270529.1 glutamate--tRNA ligase -
  CC204_RS12840 epsC 2608572..2609120 (+) 549 WP_088270530.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49954.62 Da        Isoelectric Point: 7.6809

>NTDB_id=234332 CC204_RS12815 WP_088270525.1 2603047..2604417(+) (radA) [Enterococcus wangshanyuanii strain MN05]
MAKKAKVQFECQTCGYISPKYLGRCPNCGQWNTMTEEVIQDTTDRRARVSLTGKKTQPQRLAEVVPKKEPRVKTKLMELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAESGGKVLYVSGEESAEQIKMRAERLSAIDTEFYLYAETDMKEISR
AIEKLEPDYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKHHTFRILRAVKNRFGSTNEIGIFEMREHGLEEVANPSQVFLEERLADATGSAIVVAMEGTRPILVEVQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKINEPAIDLAVAVSIASSYKENGTKPTECFIGEIGLTG
EIRRVNSIEQRVREAQKLGFTKIYLPKNNLGGWTPPEGIEIVGVATIGETLRKVFQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=234332 CC204_RS12815 WP_088270525.1 2603047..2604417(+) (radA) [Enterococcus wangshanyuanii strain MN05]
ATGGCAAAAAAAGCAAAAGTTCAATTTGAATGTCAGACCTGCGGATATATCTCCCCAAAATATTTAGGCCGCTGTCCTAA
CTGCGGGCAATGGAACACGATGACAGAAGAAGTGATCCAAGATACAACAGACCGCAGAGCTCGGGTAAGTTTGACAGGGA
AAAAGACACAGCCGCAGCGTTTAGCGGAAGTGGTGCCAAAAAAAGAACCAAGAGTCAAAACGAAATTGATGGAGCTGAAT
CGTGTGTTAGGCGGTGGAGTCGTTCCAGGATCATTAGTTTTGATCGGTGGAGATCCAGGAATCGGTAAATCAACGTTACT
TTTACAAGTTTCTCAACAACTTGCAGAAAGCGGTGGGAAAGTTCTTTATGTTTCTGGAGAAGAAAGTGCAGAGCAAATCA
AAATGCGCGCTGAGCGACTAAGTGCGATCGATACGGAATTTTACTTGTATGCTGAAACCGATATGAAAGAGATTTCAAGA
GCGATTGAAAAATTGGAACCAGACTATGTAATTATCGATTCTATTCAGACGATGACGCAGCCGGATGTGACAAGTGTTGC
CGGTAGTGTCAGTCAAGTGAGAGAAACGACAGCAGAGCTTTTAAAGCTGGCTAAGACCAACGGAATCGCTATTTTTATCG
TTGGTCATGTTACAAAAGAAGGTTCGATCGCCGGTCCTAGAATGCTGGAGCATATGGTTGATACGGTGTTATATTTTGAA
GGAGATAAGCATCATACATTTAGAATTTTAAGAGCCGTTAAAAATCGTTTCGGCTCTACAAACGAAATCGGAATTTTTGA
GATGAGAGAACACGGCTTGGAAGAGGTAGCCAACCCTTCTCAGGTTTTCTTGGAGGAGCGTTTAGCTGATGCAACAGGAT
CGGCGATCGTCGTAGCAATGGAAGGAACACGACCGATCTTAGTTGAAGTTCAAGCGCTAGTCACTCCAACGATGTTTGGG
AATGCAAAACGAACAACGACAGGGTTAGATTTCAATCGAGTGTCCTTGATCATGGCTGTTTTGGAAAAACGTGCAGGTCT
ATTGTTACAAAACCAAGATGCCTATTTGAAAGCTGCTGGCGGTGTAAAAATCAATGAACCAGCGATCGATTTAGCTGTTG
CAGTCAGTATTGCATCGAGTTATAAAGAAAACGGCACAAAACCGACAGAGTGTTTTATTGGTGAAATTGGTTTGACAGGC
GAAATTCGTCGTGTGAATAGTATTGAACAGCGTGTGCGTGAGGCGCAAAAGCTGGGCTTTACTAAAATTTATTTACCAAA
GAACAATTTAGGCGGATGGACACCGCCTGAAGGCATCGAAATCGTCGGTGTGGCTACGATCGGTGAAACATTAAGAAAAG
TATTTCAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(68-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

75.165

99.781

0.75
  radA Streptococcus mitis SK321

75.165

99.781

0.75
  radA Streptococcus pneumoniae Rx1

74.945

99.781

0.748
  radA Streptococcus pneumoniae D39

74.945

99.781

0.748
  radA Streptococcus pneumoniae R6

74.945

99.781

0.748
  radA Streptococcus pneumoniae TIGR4

74.945

99.781

0.748
  radA Bacillus subtilis subsp. subtilis str. 168

66.075

98.904

0.654

Multiple sequence alignment